mRNA_H-elongata_contig107718.634.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI) HSP 1 Score: 242 bits (618), Expect = 5.060e-73 Identity = 131/232 (56.47%), Postives = 151/232 (65.09%), Query Frame = 1
Query: 28 RYLLIECGLDPGRACPSRGRGEGRTALHWAARGGHEEICHLLLETPRPVEP--------GGSGSRGCNGDRACSYLCADVAATEGTTPFHWAAWGAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEV-----GVVPVRAWGLDDGGYTPAKVARLAGHIDLAEWLEGIAIGTATAD 684
RYLL ECG+D G ACP+RGRGEGRT LETPRPV+ GG G+ G +++ DV A EGTTP HWA WGAHL+TC+LL +RGADHR+VNAYGCN AHWCGLSGDV+VCRWL+R V+EGGAGGLDWAKTN XXXXXXXXXX GVVP RAW D+GGYTP VARLAGH+DLA+W+ G + +T D
Sbjct: 402 RYLLHECGVDAGGACPTRGRGEGRTXXXXXXXXXXXXXXXXXLETPRPVDAAAAVSVVGGGDGTLVSPGGER-TFVSPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGAGGLDWAKTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVVPRRAWERDEGGYTPEDVARLAGHVDLADWIAGAGVTPSTDD 632
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE) HSP 1 Score: 189 bits (479), Expect = 5.820e-53 Identity = 111/223 (49.78%), Postives = 127/223 (56.95%), Query Frame = 1
Query: 94 GRTALHWAARGGHEEICH----------------LLLETPRPVEPGGSGSRGCNGDRAC-------SYLCADVAATEGTTPFHWAAWGAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEVGVV-----PVRAWGLDDGGYTPAKVARLAGHIDLAEWLEGIAIGTAT 678
G + L WAA G E+C LLLETPRPV+ + S GD DV A EGTTP HWA WGAHL+TC+LL +RGADHR+VNAYGCN AHWCGLSGDV+VCRWL+R V+EGG GGLDWAKTN Q XXXXXXXXX QT P RAW D+GGYTP VARLA + G + ++T
Sbjct: 371 GSSPLDWAAGEGRLEVCRTSLXXXXXXXXXXXXXLLLETPRPVDAAAAVSVVGGGDGTLVSPGXXXXXXXPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSRRVEEGGPGGLDWAKTNLQXXXXXXXXXXXXXXXXXXXLAEQTTSXXXXXXXGPRRAWEKDEGGYTPEDVARLAXXXXXXXXIAGAGVMSST 593
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A7R9TTM5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTM5_MICPS) HSP 1 Score: 102 bits (253), Expect = 1.650e-22 Identity = 76/225 (33.78%), Postives = 99/225 (44.00%), Query Frame = 1
Query: 34 LLIECGLDPGRACPSRG-RGEGRTALHWAARGGHEEICHLLL----ETPRPVEPGGSGSRGCNGDRA-------------CSYLCADVAATEGTTPFHWAAW-GAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEVGVVPVRAWGLDDGGYTPAKVARLAGHIDLAEWL 651
L+ E G DP G G ALHWAA GH +I L+ E PR + RG + + AD T+GTTPF A W G ++ L+ D GAD +N +GCNAA W ++GDVE LA G+D N GH+ HKAA +G+ +RA D G TPA++ARL G+ +LA WL
Sbjct: 49 LVNEDGWDPKSDVEGVGVDARGSCALHWAAGEGHVDIVRYLVDVVGEDPRRAQTK-RDRRGAXXXXXXXXXXXXXXXXTNAARVDADAPTTDGTTPFMLATWKGGSIAMRWLVDDAGADPTALNVFGCNAAQWAAMNGDVEALELLAEL-------GVDVGVLNRNGHSALHKAATKGRRGACEWLIDVAGLGLKHMRA---DADGNTPAEMARLEGYAELASWL 262
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: C1N3W7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3W7_MICPC) HSP 1 Score: 100 bits (249), Expect = 7.530e-21 Identity = 75/225 (33.33%), Postives = 98/225 (43.56%), Query Frame = 1
Query: 34 LLIECGLDPGRACPSRG-RGEGRTALHWAARGGHEEICHLLL----ETPRPVEPGGSGSRGCNGDRA-------------CSYLCADVAATEGTTPFHWAAW-GAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEVGVVPVRAWGLDDGGYTPAKVARLAGHIDLAEWL 651
L+ E G DP G G ALHWAA GH +I L+ E PR + RG + + AD T+GTTPF A W G ++ L+ D G D +N +GCNAA W ++GDVE LA G+D N GH+ HKAA +G+ +RA D G TPA++ARL G+ +LA WL
Sbjct: 289 LVNEDGWDPKSDVEGVGVDARGSCALHWAAGEGHVDIVRYLVDVVGEDPRRAQTK-RDRRGAXXXXXXXXXXXXXXXXTNAARVDADAPTTDGTTPFMLATWKGGSIAMRWLVDDAGVDPTALNVFGCNAAQWAAMNGDVEALELLAEL-------GVDVGVLNRNGHSALHKAATKGRRGACEWLIDVAGLGLKHMRA---DADGNTPAEMARLEGYAELASWL 502
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A7S1X5V7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X5V7_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 4.110e-15 Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 1
Query: 319 DRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEVGVVPVRAWGLDDGGYTPAKVARLAGHIDLAEWL 651
D G D + +N +GC A HW L GD+ + RWL R GLD N QGH+ HKAA V V V LD GGY+PA +A++ H +LA WL
Sbjct: 1 DAGCDWQAINDWGCTAVHWAALQGDLPMLRWLRRL-------GLDPGHANRQGHSALHKAAYKGHSAVVHWL-----VDVAGVDPRPLDRGGYSPAVIAKMQHHTELAGWL 99
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A7S2VIJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VIJ4_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.560e-11 Identity = 45/147 (30.61%), Postives = 70/147 (47.62%), Query Frame = 1
Query: 85 RGEGRTALHWAARGGHEEICHLLLETPRPVEPGGSGSRGCNGDRACSYLCADVAATEGTTPFHWAAWGAHLSTCQLLLD-RGADHRTVNAYGCNAAHWCGLS-------GDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAA 501
R +G+TALH+AAR G E+ L+L +V++ +GTTP H A +G ++ST + L+ G+D +N + C AAH+ +S + +C++L R G+D+ QGHT HKAA
Sbjct: 322 RRDGKTALHYAARNGRNEMIDLILSKKDAPS-------------------VNVSSGDGTTPLHMACYGGYVSTVKRLVQTHGSDALAMNDWDCGAAHFAAMSLGKEGTDAVIALCKYLKRHC------GVDFTSRQKQGHTPLHKAA 443
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A812U3K0_9DINO (Rai14 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812U3K0_9DINO) HSP 1 Score: 72.8 bits (177), Expect = 2.610e-11 Identity = 51/175 (29.14%), Postives = 67/175 (38.29%), Query Frame = 1
Query: 37 LIECGLDPGRACPSRGRGEGRTALHWAARGGHEEICHLLLETPRPVEPGGSGSRGCNGDR-----------------ACSYLCADVAATEGTTPFHWAAWGAHLSTCQLLLDRGADHRTVNAYGCNAAHWC----GLSGDVEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKA 498
L+ G D +A RG G LHWAA GGH ++C LL + + A D A G TP AAW H++ C +L+ R AD N++GCNA H G S +E+ +L S + G N GH HKA
Sbjct: 188 LVVAGSDATKATDHRGNG----VLHWAAGGGHVDVCEYLLHELKMDARARTSKXXXXXXXXXXXXXXXXXXXXXXLDAAGDDFVDAATDGGDTPLMLAAWQGHITCCSILVSRRADVHHTNSWGCNAMHKASRMDGASSSLEMLEYLTHSRVDAGL-------VNCNGHNSLHKA 351
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A7S3AG66_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG66_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 1.250e-10 Identity = 45/119 (37.82%), Postives = 55/119 (46.22%), Query Frame = 1
Query: 325 GADHRTVNAYGCNAAHWCGLSGD---VEVCRWLARSVQEGGAGGLDWAKTNSQGHTICHKAALXXXXXXXXXXRRQTEVGVVPVRAWGLDDGGYTPAKVARLAGHIDLAEWLEGIAIGT 672
GAD +N+YGCNA W + + CRWL R GLD A N GH+ HKAA+ EVG+ V D G TPA +ARL GH +LA+ LE T
Sbjct: 3 GADLHAINSYGCNAIQWAAQADPDHGIRTCRWLQRR-------GLDLALLNRNGHSALHKAAVKGRREVCEWLLSD-EVGL-GVPHLQPDGDGNTPALMARLEGHTELADLLESAVADT 112
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A0P7B3D1_9HYPO (Glycerophosphocholine phosphodiesterase n=3 Tax=Nectriaceae TaxID=110618 RepID=A0A0P7B3D1_9HYPO) HSP 1 Score: 60.1 bits (144), Expect = 7.530e-7 Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query: 34 LLIECGLDPGRACPSRGRGEGRTALHWAARGGHEEICHLLLETPRPVEPGGSGSRGCNGDRACSYLCADVAATEGT---TPFHWAAWGAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQE 432
+L++ G+D + TALH AAR GH+E ++LE + AD+ ATE T TP H AA LS QLL+D GAD ++ G A L G +E+ R L QE
Sbjct: 472 MLVDAGVDINWKDKTN-----ETALHIAARFGHDECARVILEGTESQK-------------------ADLEATESTYSWTPLHVAAVDGKLSVAQLLVDAGADVLRPDSSGWIAKEHAALRGHIEIARLLTTDAQE 583
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Match: A0A7D5YNP0_9HYPO (Glycerophosphocholine phosphodiesterase n=2 Tax=Metarhizium TaxID=5529 RepID=A0A7D5YNP0_9HYPO) HSP 1 Score: 59.3 bits (142), Expect = 1.440e-6 Identity = 43/133 (32.33%), Postives = 62/133 (46.62%), Query Frame = 1
Query: 34 LLIECGLDPGRACPSRGRGEGRTALHWAARGGHEEICHLLLETPRPVEPGGSGSRGCNGDRACSYLCADVAATEGTTPFHWAAWGAHLSTCQLLLDRGADHRTVNAYGCNAAHWCGLSGDVEVCRWLARSVQE 432
+L++ G+D + G TALH AAR GHE+ ++L GSGS+ N + A + + TP H AA LS +LL+D GAD +A G A L G +++ R+LA E
Sbjct: 1146 MLVDAGVDINWTDKT-----GETALHIAARFGHEDCARIILR--------GSGSQKANMELAEN--------SYSWTPLHVAAVDGALSVIRLLVDAGADVSKPDASGWTAKEHAALRGHMDIARFLAGHTNE 1257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107718.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107718.634.1 >prot_H-elongata_contig107718.634.1 ID=prot_H-elongata_contig107718.634.1|Name=mRNA_H-elongata_contig107718.634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp MVTKRIADHRYLLIECGLDPGRACPSRGRGEGRTALHWAARGGHEEICHLback to top mRNA from alignment at H-elongata_contig107718:214..1670+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107718.634.1 ID=mRNA_H-elongata_contig107718.634.1|Name=mRNA_H-elongata_contig107718.634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1457bp|location=Sequence derived from alignment at H-elongata_contig107718:214..1670+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107718:214..1670+ >mRNA_H-elongata_contig107718.634.1 ID=mRNA_H-elongata_contig107718.634.1|Name=mRNA_H-elongata_contig107718.634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig107718:214..1670+ (Himanthalia elongata Himel1 dioecious)back to top |