mRNA_H-elongata_contig107685.632.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: D8LID0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID0_ECTSI) HSP 1 Score: 282 bits (721), Expect = 2.620e-84 Identity = 168/270 (62.22%), Postives = 186/270 (68.89%), Query Frame = 1
Query: 1 MMFTAVTDDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHLEAPEPLHTLPGY----GGGMAQSEP----VGNGHDATGRQTWGHMLGTAAPGPASGHGSARGLGGTRSDDGLWNDRVLNAAQRQMRGG-HNRVTSFSSETRRHNSARGRTG---------GPPQSSSAGTSV-VGRSQSINTSSARVHQGFQRTRSSSF-----------STTVPERGRT-LGRVAHGTAPHRGGA 717
MMFTAVTDDGVSLGSERGSELMM+GADPSCPLCN AY EG++LCLLPCLHVFH+ CI+KWCNRHIVCPLCKRHLEA EPLHTL GG QSEP GNGH R W +LG APGPAS HGS RGLGGTRS+DG+WNDRVLNAAQ+Q GG HNRVTSFSSETRR N+ARGR G GPP SSSAG + R QS++ S+ G+Q+ + T +RGR GRVAHGTA HR A
Sbjct: 338 MMFTAVTDDGVSLGSERGSELMMDGADPSCPLCNKAYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPLHTLTASYNHPGGNAVQSEPGHRGYGNGHQ---RHQWRGVLGNTAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQQQQMGGKHNRVTSFSSETRRSNNARGRPGERVGSGRGGGPPHSSSAGAGMGPQRPQSVSGSA-----GWQQXXXXXXXXXXXXXXXXTTATEQQRGRGGSGRVAHGTARHRSSA 599
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A6H5JTX8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX8_9PHAE) HSP 1 Score: 271 bits (692), Expect = 3.480e-80 Identity = 164/272 (60.29%), Postives = 176/272 (64.71%), Query Frame = 1
Query: 1 MMFTAVTDDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHLEAPEPLHTLPGY----GGGMAQSEP----VGNGHDATGRQTWGHMLGTAAPGPASGHGSARGLGGTRSDDGLWNDRVLNAAQRQMRGG-HNRVTSFSSETRRHNSARGRTG---------GPPQSSSAGTSVVG-RSQSINTSSARVHQGFQRTRSSSFST-------------TVPERGRT-LGRVAHGTAPHRGGA 717
MMFTAVTDDGVSLGSERGSELMM+GADPSCPLCN Y EG++LCLLPCLHVFH+ CI+KWCNRHIVCPLCKRHLEA EPLHTL G QSEP GNG R W MLG AAPGPAS HGS RGLGGTRS+DG+WNDRVLNAAQRQ GG HNRVTSFSSETRR N+ARGR G GPP SSS R S++ S+ R T +RGR GRVAHGTA HR A
Sbjct: 336 MMFTAVTDDGVSLGSERGSELMMDGADPSCPLCNKVYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPLHTLTASYNHPGDNTVQSEPGHRGYGNGQQ---RHQWRGMLGNAAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQRQQMGGKHNRVTSFSSETRRSNNARGRPGERAGSGRGGGPPHSSSXXXXXXXXRPHSVSGSTGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXTEQQRGRGGSGRVAHGTARHRSSA 604
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A7S0UHT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHT1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.680e-9 Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 7 FTAVTDDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHL 222
F + T G GS+ G L E +P+C +C YE+G +L +LPC HVFHE+CI W + ++ CPLC L
Sbjct: 252 FKSPTSHGNLFGSDGGKTLDEE--EPTCSVCLCEYEKGDNLIMLPCKHVFHEDCIKSWTDNNLRCPLCNADL 321
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A1S6GLJ1_9POAL (E3 ubiquitin protein ligase RIE1-like protein (Fragment) n=1 Tax=Eleocharis dulcis TaxID=110284 RepID=A0A1S6GLJ1_9POAL) HSP 1 Score: 60.1 bits (144), Expect = 8.530e-9 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 88 CPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHL 222
C +C YE+G++LC LPC H FH CI KW H CPLCK ++
Sbjct: 3 CCICLATYEDGTELCALPCNHHFHSTCIIKWLRIHATCPLCKYNI 47
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A0K9P9K8_ZOSMR (Putative Ring finger protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P9K8_ZOSMR) HSP 1 Score: 64.3 bits (155), Expect = 2.240e-8 Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 7 FTAVTDDGV--SLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHL 222
F + D G+ G+E E + D C +C AY++G++LC LPC H FH NC+ KW + CPLCK ++
Sbjct: 284 FKSDLDGGIMTECGTETPYENALSAEDAECCICLSAYDDGAELCELPCSHHFHSNCVVKWLYINATCPLCKYNI 357
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A383VIV6_TETOB (RING-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VIV6_TETOB) HSP 1 Score: 62.4 bits (150), Expect = 5.410e-8 Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 34 SLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCK 213
S S G E M E P C +C A++E + LLPCLH++HE CI W R +CP+C+
Sbjct: 46 SQNSNDGKETMTEDELPQCVICCCAFQEQEQVKLLPCLHMYHEECIDAWLRRDHICPICQ 105
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A7I8IBN1_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IBN1_SPIIN) HSP 1 Score: 62.0 bits (149), Expect = 9.970e-8 Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1
Query: 10 TAVTDDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCK 213
T VTD ++G +L D C +C YE+G++LC LPC H FH CI KW + +CPLCK
Sbjct: 219 TNVTDTRNTMG-----DLSHSPEDSDCCICLCRYEDGAELCSLPCNHYFHSGCITKWLRINAICPLCK 281
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A7I8JYG6_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JYG6_SPIIN) HSP 1 Score: 61.6 bits (148), Expect = 1.840e-7 Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 55 SELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCK 213
S+L D C +C YE+G++LC LPC H FH CI KW + +CPLCK
Sbjct: 302 SDLSHSPEDSDCCICLCRYEDGAELCSLPCNHYFHSGCITKWLRINAICPLCK 354
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A8J5XKQ2_DIALT (RING-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKQ2_DIALT) HSP 1 Score: 62.0 bits (149), Expect = 1.920e-7 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 22 DDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCKRHLEAP 231
D + SER E ++ A SC +C + +EE ++C+LPC HVFH CIH+W + CP C+ + P
Sbjct: 593 DAPAARASERDDERSLD-ASVSCVVCLMEFEEEVEVCVLPCRHVFHTECIHRWLRQEGSCPQCRHRIAPP 661
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Match: A0A7J7CFU2_TRIWF (E3 ubiquitin-protein ligase n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CFU2_TRIWF) HSP 1 Score: 60.8 bits (146), Expect = 3.510e-7 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 40 GSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHVFHENCIHKWCNRHIVCPLCK 213
G++ S+ ++ D C +C AY++G+DL LPCLH FH CI KW + + CPLCK
Sbjct: 312 GTDMPSKRILSEEDTECCICLSAYDDGTDLRELPCLHHFHCTCIDKWLHINATCPLCK 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107685.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107685.632.1 >prot_H-elongata_contig107685.632.1 ID=prot_H-elongata_contig107685.632.1|Name=mRNA_H-elongata_contig107685.632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp MMFTAVTDDGVSLGSERGSELMMEGADPSCPLCNVAYEEGSDLCLLPCLHback to top mRNA from alignment at H-elongata_contig107685:20..1413- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107685.632.1 ID=mRNA_H-elongata_contig107685.632.1|Name=mRNA_H-elongata_contig107685.632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig107685:20..1413- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107685:20..1413- >mRNA_H-elongata_contig107685.632.1 ID=mRNA_H-elongata_contig107685.632.1|Name=mRNA_H-elongata_contig107685.632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig107685:20..1413- (Himanthalia elongata Himel1 dioecious)back to top |