mRNA_H-elongata_contig107605.626.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: D7FHL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL7_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.690e-21 Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 52 QRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
+RLY +LL MEEWSG KLK TACYG R+Y+RGS+LANHVDRVDTHV++AIIN+ Q
Sbjct: 157 RRLYQDLLPVMEEWSGTKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIINVEQ 212
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: A0A6H5JDK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.510e-20 Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 52 QRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIIN 210
+RLY +LL MEEWSG+KLK TACYG R+Y+RGS+LANHVDRVDTHV++AIIN
Sbjct: 157 RRLYQDLLPVMEEWSGIKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIIN 209
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: UPI001EF5DA8E (2OG-Fe(II) oxygenase n=1 Tax=Candidatus Nitrotoga sp. M5 TaxID=2890409 RepID=UPI001EF5DA8E) HSP 1 Score: 66.6 bits (161), Expect = 3.820e-11 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 46 LPQRLYDE----LLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
LPQ + E L S + EWSG+ LKPT YG R Y RG++L H DR+DTH+++AIINI Q
Sbjct: 351 LPQEMRTEIHTSLQSELTEWSGINLKPTYVYGIRTYHRGAILKPHRDRLDTHIISAIINIDQ 412
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: A0A351NWU8_9GAMM (Proline hydroxylase (Fragment) n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A351NWU8_9GAMM) HSP 1 Score: 63.2 bits (152), Expect = 9.960e-11 Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 46 LPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
L ++D+L + ME WSG L PT YG R Y RG++L H DR+ TH++ AIIN+AQ
Sbjct: 36 LRNEIHDQLKTSMERWSGQDLLPTYVYGIRIYHRGAILRPHRDRLATHIIGAIINVAQ 93
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: UPI00037B83B9 (2OG-Fe(II) oxygenase n=1 Tax=Thiofilum flexile TaxID=125627 RepID=UPI00037B83B9) HSP 1 Score: 64.7 bits (156), Expect = 1.820e-10 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 46 LPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
L Q ++ + +EEW+ L+LKP+A YG R Y RG+ L HVDR+DTH ++ IIN+AQ
Sbjct: 354 LRQTIFTTICPLLEEWTQLELKPSAIYGIREYQRGATLKMHVDRIDTHQVSMIINVAQ 411
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: UPI001F22CF4C (2OG-Fe(II) oxygenase n=1 Tax=Thiothrix sp. CT3 TaxID=96472 RepID=UPI001F22CF4C) HSP 1 Score: 63.9 bits (154), Expect = 3.400e-10 Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 46 LPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
L Q ++ + +E+W +KLKP+A YG R Y RG+ L HVDR+DTH ++ IIN+AQ
Sbjct: 355 LRQAIFSVICPLLEDWVNIKLKPSAVYGIREYQRGATLKMHVDRIDTHQVSMIINVAQ 412
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.190e-9 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 46 LPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
L +++ L +EEWSG++L T+CYG R Y RGS LANHVD TH ++AIIN+ Q
Sbjct: 340 LKPAIFNGLRPILEEWSGVELVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQ 397
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: A0A7S3NH51_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH51_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.620e-9 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 22 VTVERFCFLPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
+ +++F + L E+ +E W+GLKLK T+ +G R Y R SVL NHVDR DTH+ +A+I I Q
Sbjct: 247 IDLDKFPKIHSALVREMRQILEWWTGLKLKHTSTFGVRIYRRDSVLINHVDRCDTHIASAVIQIHQ 312
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: Q21FK1_SACD2 (2OG-Fe(II) oxygenase n=2 Tax=Saccharophagus degradans TaxID=86304 RepID=Q21FK1_SACD2) HSP 1 Score: 62.0 bits (149), Expect = 1.630e-9 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 46 LPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
L Q ++DEL ME W L PT YG R Y RG+ L H DR++TH+++AIINIAQ
Sbjct: 362 LRQAVHDELKPKMEAWCNQPLAPTYVYGIREYHRGAKLKMHRDRLETHIISAIINIAQ 419
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Match: A0A553PGD3_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PGD3_TIGCA) HSP 1 Score: 61.6 bits (148), Expect = 2.260e-9 Identity = 24/45 (53.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 85 EEWSGLKLKPTACYGARNYFRGSVLANHVDRVDTHVMAAIINIAQ 219
E+WSG+KL+P YG R Y RGS +++HVD+ +TH+++AIIN+ Q
Sbjct: 535 EKWSGIKLEPVTVYGIRRYLRGSWMSSHVDKKETHIISAIINVGQ 579 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107605.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107605.626.1 >prot_H-elongata_contig107605.626.1 ID=prot_H-elongata_contig107605.626.1|Name=mRNA_H-elongata_contig107605.626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp MESLSLDVTVERFCFLPQRLYDELLSPMEEWSGLKLKPTACYGARNYFRGback to top mRNA from alignment at H-elongata_contig107605:1863..2081+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107605.626.1 ID=mRNA_H-elongata_contig107605.626.1|Name=mRNA_H-elongata_contig107605.626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig107605:1863..2081+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107605:1863..2081+ >mRNA_H-elongata_contig107605.626.1 ID=mRNA_H-elongata_contig107605.626.1|Name=mRNA_H-elongata_contig107605.626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig107605:1863..2081+ (Himanthalia elongata Himel1 dioecious)back to top |