mRNA_H-elongata_contig10757.623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10757.623.1
Unique NamemRNA_H-elongata_contig10757.623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A6H5L4R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R8_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 8.750e-124
Identity = 175/195 (89.74%), Postives = 188/195 (96.41%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            LQ+V++KVR ILTQLQQAIKGEVVMTEELQETLYAVY+AKVPRLW FTITGDEFSWILPTLGLWFSSLITRDEQDRTWLN+GRPTCYWLTGFFNPQA   GMLTAMKQEVTRKHKA+KWALDDV+YHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWS+ EG+MVESEPKKLFVSLPVL+VSAN KSDQV+++
Sbjct:  168 LQKVIAKVRSILTQLQQAIKGEVVMTEELQETLYAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGRPTCYWLTGFFNPQAKAWGMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFVSANTKSDQVKVK 362          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: D7FPL8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL8_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 3.220e-111
Identity = 174/195 (89.23%), Postives = 187/195 (95.90%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            LQ+V++KVR ILTQLQQAIKGEVVMTEELQETLYAVY+AKVPRLW FTITGDEFSWILPTLGLWFSSLITRDEQDRTWLN+GRPTCYWLTGFFNPQ    GMLTAMKQEVTRKHKA+KWALDDV+YHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWS+ EG+MVESEPKKLFVSLPVL+VSAN KSDQV+++
Sbjct: 4397 LQKVIAKVRSILTQLQQAIKGEVVMTEELQETLYAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGRPTCYWLTGFFNPQ----GMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFVSANTKSDQVKVK 4587          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: W7TAL6_9STRA (Dynein heavy chain n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAL6_9STRA)

HSP 1 Score: 290 bits (743), Expect = 4.400e-97
Identity = 139/195 (71.28%), Postives = 165/195 (84.62%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            +QR++SKV+  L QLQ AIKGEVVM+EEL  TL AVY+AKVP  WVFT+ GDEFSWILPTLGLWFSSL+ RDEQ RTWLN GRP  YWL GF NPQ    G+LTAMKQEVTR+HKADKWALDDV+YHTEVTSYER EQ+RSPP+EG+Y++GL L+GA W++ EG +VESE KKLFV LPVL+V+AN KS++ ++R
Sbjct:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQ----GLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVR 191          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S4NI87_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI87_9STRA)

HSP 1 Score: 291 bits (746), Expect = 3.140e-95
Identity = 141/195 (72.31%), Postives = 166/195 (85.13%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            LQ V++KVRF LTQLQ AIKGEVVMT ELQETL ++++AKVP LW  T+TGDEFSW LPTLGLWFSSL+ RDEQ RTWLN+ RP  +WLTGFFNP     G LTAMKQEVTR+HKA+KWALDDV+YHTEVT++ER++QV+SPPAEG+YIHGLFLDGAAWSR EG +VES+PK LFV LPVL+V+ N K ++ R R
Sbjct:  167 LQNVITKVRFTLTQLQLAIKGEVVMTSELQETLDSMFDAKVPHLWENTLTGDEFSWRLPTLGLWFSSLLNRDEQYRTWLNNARPNSFWLTGFFNPN----GCLTAMKQEVTRQHKANKWALDDVVYHTEVTNFERVDQVKSPPAEGIYIHGLFLDGAAWSRQEGHLVESQPKVLFVPLPVLFVTGNAKKEEDRSR 357          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S4T437_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T437_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.510e-93
Identity = 137/191 (71.73%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
            LQ V+SKVRFILTQLQ AIKGEVVMT ELQETL ++++AKVP  W  T+TGDEFSW LPTLGLWFSSL+ RD+Q RTWLN+GRP  +WLTGFFNP     G LTAMKQEVTRKHKA+KWALDDV+YHTEV  +ER EQV++PP EG+YIHGLFLDGAA+SR EG ++ES+PK LFVSLP+L+V+ N + D+
Sbjct:  157 LQNVISKVRFILTQLQLAIKGEVVMTAELQETLDSMFDAKVPHFWENTLTGDEFSWRLPTLGLWFSSLLNRDDQYRTWLNNGRPNSFWLTGFFNPN----GCLTAMKQEVTRKHKAEKWALDDVVYHTEVMPFERAEQVKNPPTEGIYIHGLFLDGAAFSRQEGHLIESQPKTLFVSLPILFVTGNARKDE 343          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A835YLK0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK0_9STRA)

HSP 1 Score: 302 bits (774), Expect = 1.380e-91
Identity = 146/191 (76.44%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
            LQRV+ KVRF L QLQ AIKGEVVM+EELQ+ L A+Y+A+V RLW +TI GDEFSW+LPTLGLWFSSLI RDEQ RTWLN GRP  YWLTGFFNPQ    GMLTAMKQEVTRKHK DKWALDDV+YHTEVT++ER+EQVRS P EGVYIHGLF+DGAAWS+ EG +VES PK LF SLPV+ VSAN K DQ
Sbjct: 4397 LQRVIGKVRFTLAQLQLAIKGEVVMSEELQDALNAIYDARVARLWTYTIAGDEFSWVLPTLGLWFSSLIMRDEQSRTWLNGGRPNVYWLTGFFNPQ----GMLTAMKQEVTRKHKGDKWALDDVVYHTEVTTHERVEQVRSSPQEGVYIHGLFIDGAAWSKQEGCLVESAPKVLFTSLPVMLVSANTKKDQ 4583          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A7S0CDH8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDH8_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.720e-90
Identity = 131/191 (68.59%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQ 573
            LQ V+ KVRF L QLQ AIKGEVVMT ELQETL ++++A+VP  W  T+TGDEFSW LPTLGLWFSSL+ RDEQDR+WL++GRP  +WLTGFFNP     G+LTAMKQEVTRKHKA KWALDDV+YHTEV+++ER +QV+S PAEG+Y+HGLFLDG+AWS+ +G +VES+PK LFV LP+L+V+ N+K D+
Sbjct:  183 LQNVIFKVRFTLGQLQLAIKGEVVMTAELQETLDSMFDARVPHYWENTLTGDEFSWRLPTLGLWFSSLLNRDEQDRSWLDNGRPLSFWLTGFFNPN----GLLTAMKQEVTRKHKAQKWALDDVVYHTEVSNFERADQVKSAPAEGIYVHGLFLDGSAWSKSDGHLVESQPKVLFVPLPILFVTGNVKKDE 369          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A4D9CRU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRU4_9STRA)

HSP 1 Score: 292 bits (747), Expect = 5.920e-88
Identity = 140/195 (71.79%), Postives = 165/195 (84.62%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            +QR++SKV+  L QLQ AIKGEVVM+EEL  TL AVY+AKVP  WVFT+ GDEFSWILPTLGLWFSSL+ RDEQ RTWLN GRP  YWL GF NPQ    G+LTAMKQEVTR+HKADKWALDDV+YHTEVTSYER EQ+RSPP+EG+Y+HGL L+GA W++ EG +VESE KKLFV LPVL+V+AN KS++ ++R
Sbjct: 4434 IQRIISKVKITLQQLQLAIKGEVVMSEELVATLVAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQ----GLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVHGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVR 4624          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A2D5NKH1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5NKH1_9BACT)

HSP 1 Score: 285 bits (729), Expect = 1.100e-87
Identity = 135/195 (69.23%), Postives = 167/195 (85.64%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            LQ+V++K+RF++ QLQ AIKGEVVM+EEL +TL A+Y+AKVP++WV T+ GDEFSWILPTLGLWFSSL+ RDEQ+RTWLNSGRP  YWLTGFFNPQ    GMLTAMKQEVTR H+ + WALD+VIYHTEVTS+ER+EQVRS P EG YIHGLFL+G A+ +++G + ESEPKKLFV LPVL+V+AN +  +++ R
Sbjct:  665 LQKVIAKIRFVMQQLQLAIKGEVVMSEELADTLGAMYDAKVPQMWVLTVAGDEFSWILPTLGLWFSSLLLRDEQNRTWLNSGRPNSYWLTGFFNPQ----GMLTAMKQEVTRNHRKENWALDNVIYHTEVTSFERVEQVRSKPDEGAYIHGLFLEGGAFDKNQGQLCESEPKKLFVPLPVLFVTANQEEPELKKR 855          
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Match: A0A482S2S2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2S2_9ARCH)

HSP 1 Score: 287 bits (735), Expect = 1.290e-87
Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 1
Query:    1 LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNIGMLTAMKQEVTRKHKAD--KWALDDVIYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR 585
            LQ V+SKV F+L QL+ AI GEVVMT++LQ+ L A+YEAKVPR+W+FT+ GDEFSWILPTLGLWFSSL+ RDEQDRTWL +GRP  YWLTGFFNPQ    GMLTAMKQEV RKH+ D  KWALDD+IYHTEVT+Y+R+E V+SPP+EG YIHGLF++G AWS+   ++VESEPK LFV LPVL VSAN+KS++++ R
Sbjct:  822 LQNVISKVEFMLKQLRLAINGEVVMTDQLQQCLDAIYEAKVPRMWLFTVAGDEFSWILPTLGLWFSSLLQRDEQDRTWLLTGRPNTYWLTGFFNPQ----GMLTAMKQEVCRKHQKDANKWALDDIIYHTEVTNYDRIESVKSPPSEGCYIHGLFIEGCAWSKEHQMLVESEPKVLFVPLPVLMVSANLKSEEMKNR 1014          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10757.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4R8_9PHAE8.750e-12489.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPL8_ECTSI3.220e-11189.23Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
W7TAL6_9STRA4.400e-9771.28Dynein heavy chain n=1 Tax=Nannochloropsis gaditan... [more]
A0A7S4NI87_9STRA3.140e-9572.31Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4T437_9STRA1.510e-9371.73Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A835YLK0_9STRA1.380e-9176.44Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S0CDH8_9STRA1.720e-9068.59Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A4D9CRU4_9STRA5.920e-8871.79Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D5NKH1_9BACT1.100e-8769.23Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A482S2S2_9ARCH1.290e-8770.05Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10757contigH-elongata_contig10757:1202..2984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.1
Seed ortholog evalue6.3e-97
Seed eggNOG ortholog2880.D7FPL8
KEGG koko:K10408
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptiondynein heavy chain
Ec32 orthologEc-16_001480.1
Exons4
Model size585
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10757.623.1prot_H-elongata_contig10757.623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10757 1202..2984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.4320357-CDS-H-elongata_contig10757:1201..13211622929605.4320357-CDS-H-elongata_contig10757:1201..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 1202..1321 +
1691679088.5283186-CDS-H-elongata_contig10757:1201..13211691679088.5283186-CDS-H-elongata_contig10757:1201..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 1202..1321 +
1622929605.4473295-CDS-H-elongata_contig10757:1781..19611622929605.4473295-CDS-H-elongata_contig10757:1781..1961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 1782..1961 +
1691679088.540276-CDS-H-elongata_contig10757:1781..19611691679088.540276-CDS-H-elongata_contig10757:1781..1961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 1782..1961 +
1622929605.4694366-CDS-H-elongata_contig10757:2357..24711622929605.4694366-CDS-H-elongata_contig10757:2357..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 2358..2471 +
1691679088.5544815-CDS-H-elongata_contig10757:2357..24711691679088.5544815-CDS-H-elongata_contig10757:2357..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 2358..2471 +
1622929605.487427-CDS-H-elongata_contig10757:2813..29841622929605.487427-CDS-H-elongata_contig10757:2813..2984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 2814..2984 +
1691679088.568438-CDS-H-elongata_contig10757:2813..29841691679088.568438-CDS-H-elongata_contig10757:2813..2984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10757 2814..2984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10757.623.1

>prot_H-elongata_contig10757.623.1 ID=prot_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
LQRVVSKVRFILTQLQQAIKGEVVMTEELQETLYAVYEAKVPRLWVFTIT
GDEFSWILPTLGLWFSSLITRDEQDRTWLNSGRPTCYWLTGFFNPQASNI
GMLTAMKQEVTRKHKADKWALDDVIYHTEVTSYERMEQVRSPPAEGVYIH
GLFLDGAAWSRHEGIMVESEPKKLFVSLPVLYVSANIKSDQVRLR
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mRNA from alignment at H-elongata_contig10757:1202..2984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10757.623.1 ID=mRNA_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1783bp|location=Sequence derived from alignment at H-elongata_contig10757:1202..2984+ (Himanthalia elongata Himel1 dioecious)
TTGCAGAGAGTGGTGTCAAAGGTTCGCTTTATCTTGACACAGCTACAGCA AGCAATCAAGGGAGAGGTCGTGATGACGGAGGAACTTCAGGAGACTCTGT ACGCAGTGTACGAGGCTAAGGTGGAGGGCTCTCCACGGTTGATCACGTTA CGACTATATATTTCAACGCATGTTACAGCGGCGGCAGCAGCAGCAGCAGC AGCAGTGATACAACCGGCTGCCGAAATCAAGCTTTTGTATCGCGGAAGGA AGTCTAGATTGTATTTATATGAATTCTTGATTTGATTTGCTACTGTGCGA AACAAAACACATACCGGTACTGTAGACACTTCGTGATTGAATCTCAGTCG GACATCGAAAATATCCAAATGTCATGAGTCGTGACACACGTTTGTTTGTT GCAACATCAACTCCTAGTCCTGCTAACAGTGCAAGCTCAGCATTCAGAGA TGTCCTCATTGAAATTGTGGAGCCAGGAGTGCTGCCCTCAGTAGACTAGA ATCCCTGATGCTTTGCCTACGAAGGTGGCTATAAACCACCTCTGCGTCGT CGTGCTTTTGGGTTGTGGGGTGTGAAATAGGTCCCGAGGTTGTGGGTTTT TACAATAACCGGAGACGAGTTTTCGTGGATCTTACCCACGCTGGGACTGT GGTTCAGCTCTTTGATTACGAGGGACGAGCAAGACAGGACGTGGCTGAAC AGCGGTCGACCGACTTGCTACTGGCTCACCGGCTTCTTTAATCCTCAGGC AAGCAACATCGTGGGCTGAGTGAAACCTCACCAATTCTGGAGATGGTACA TGTGACCCTCGGGTGCATCAGAGCACTGTCATAATTTCCCAACGAGCACA GCTCTCGATCGAGAGGAATTCACTTGTTAAGAGATTTGGCAAATCGATTT ATTTATTTTTGTTTTGTTCTCGCTTCTCTTGTCTTGAAGATAGAGAGGGC TCCTCTTCTCTTGAAGTTAGAGATAGAGAGGGCCTCTTGAAGAGAGAGAT GGAGAGGGCTCTTGAGGATACAGAAGGCGTTTCTCCCAGAGAAATCTCCA CGGTATCTATCAGGCTTGCTCTTCCAACACCCAAACCCGCACGATTATTT ATAGTTTATACTGACAAAGAGCCTCGTTTGCGTTGCGATTTCAATCACTT GCGCAGGGAATGTTGACTGCGATGAAGCAAGAAGTTACCCGTAAACACAA AGCCGATAAATGGGCGTTGGACGACGTAATCTACCATACGGAGGTCACGT CATACGAGCGCATGGAACAGGTGAAGCTCAGATTGGCTTCGCGTGTGCCA ACCACCGCTTAATATGGGCCCGAGACAAAATGTCGTCTTCGCGTAAATCA CAGACATCATCGTATCCTTTCATGCCGAGAGCGAAAGGAATTGTGGTCGT CCGTACCCGAGAACTGCTCTACGAGCTTGGGCTTTTACTTGATGGAGAAA TGAGCCTTAGATTGGAACGAAATCTAAGTCGAAAGTTGGCCTTCTCATCA ATCGACGACGTGGGGAGGGGGAGGGGGGGGGGGGGCGAGGGGAAGAAATC CACAAAGGCCGTACCGTACGATTTTTTACTACCCGTCCCTCTCGTATCCC GCTCCATGCAAGGTCCGGTCCCCTCCTGCAGAGGGTGTGTATATCCACGG TCTCTTTCTCGACGGGGCGGCGTGGTCAAGACACGAGGGAATCATGGTGG AGTCAGAGCCAAAGAAACTGTTCGTTTCGCTGCCGGTGCTTTACGTCAGC GCCAACATCAAGAGCGACCAGGTCCGTTTACGA
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Coding sequence (CDS) from alignment at H-elongata_contig10757:1202..2984+

>mRNA_H-elongata_contig10757.623.1 ID=mRNA_H-elongata_contig10757.623.1|Name=mRNA_H-elongata_contig10757.623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig10757:1202..2984+ (Himanthalia elongata Himel1 dioecious)
TTGCAGAGAGTGGTGTCAAAGGTTCGCTTTATCTTGACACAGCTACAGCA
AGCAATCAAGGGAGAGGTCGTGATGACGGAGGAACTTCAGGAGACTCTGT
ACGCAGTGTACGAGGCTAAGTTGCAGAGAGTGGTGTCAAAGGTTCGCTTT
ATCTTGACACAGCTACAGCAAGCAATCAAGGGAGAGGTCGTGATGACGGA
GGAACTTCAGGAGACTCTGTACGCAGTGTACGAGGCTAAGGTCCCGAGGT
TGTGGGTTTTTACAATAACCGGAGACGAGTTTTCGTGGATCTTACCCACG
CTGGGACTGTGGTTCAGCTCTTTGATTACGAGGGACGAGCAAGACAGGAC
GTGGCTGAACAGCGGTCGACCGACTTGCTACTGGCTCACCGGCTTCTTTA
ATCCTCAGGCAAGCAACATCGTCCCGAGGTTGTGGGTTTTTACAATAACC
GGAGACGAGTTTTCGTGGATCTTACCCACGCTGGGACTGTGGTTCAGCTC
TTTGATTACGAGGGACGAGCAAGACAGGACGTGGCTGAACAGCGGTCGAC
CGACTTGCTACTGGCTCACCGGCTTCTTTAATCCTCAGGCAAGCAACATC
GGAATGTTGACTGCGATGAAGCAAGAAGTTACCCGTAAACACAAAGCCGA
TAAATGGGCGTTGGACGACGTAATCTACCATACGGAGGTCACGTCATACG
AGCGCATGGAACAGGGAATGTTGACTGCGATGAAGCAAGAAGTTACCCGT
AAACACAAAGCCGATAAATGGGCGTTGGACGACGTAATCTACCATACGGA
GGTCACGTCATACGAGCGCATGGAACAGGTCCGGTCCCCTCCTGCAGAGG
GTGTGTATATCCACGGTCTCTTTCTCGACGGGGCGGCGTGGTCAAGACAC
GAGGGAATCATGGTGGAGTCAGAGCCAAAGAAACTGTTCGTTTCGCTGCC
GGTGCTTTACGTCAGCGCCAACATCAAGAGCGACCAGGTCCGTTTACGAG
TCCGGTCCCCTCCTGCAGAGGGTGTGTATATCCACGGTCTCTTTCTCGAC
GGGGCGGCGTGGTCAAGACACGAGGGAATCATGGTGGAGTCAGAGCCAAA
GAAACTGTTCGTTTCGCTGCCGGTGCTTTACGTCAGCGCCAACATCAAGA
GCGACCAGGTCCGTTTACGA
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