mRNA_H-elongata_contig10756.622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10756.622.1
Unique NamemRNA_H-elongata_contig10756.622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10756.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10756contigH-elongata_contig10756:5382..7865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10756.622.1prot_H-elongata_contig10756.622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10756 5549..7865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.335528-UTR-H-elongata_contig10756:5381..55481622929605.335528-UTR-H-elongata_contig10756:5381..5548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10756 5382..5548 -
1691679088.4997127-UTR-H-elongata_contig10756:5381..55481691679088.4997127-UTR-H-elongata_contig10756:5381..5548Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10756 5382..5548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929605.3545785-CDS-H-elongata_contig10756:5548..57271622929605.3545785-CDS-H-elongata_contig10756:5548..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10756 5549..5727 -
1691679088.50937-CDS-H-elongata_contig10756:5548..57271691679088.50937-CDS-H-elongata_contig10756:5548..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10756 5549..5727 -
1622929605.3778791-CDS-H-elongata_contig10756:7771..78651622929605.3778791-CDS-H-elongata_contig10756:7771..7865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10756 7772..7865 -
1691679088.5182498-CDS-H-elongata_contig10756:7771..78651691679088.5182498-CDS-H-elongata_contig10756:7771..7865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10756 7772..7865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10756.622.1

>prot_H-elongata_contig10756.622.1 ID=prot_H-elongata_contig10756.622.1|Name=mRNA_H-elongata_contig10756.622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
IILKKQTDLEFTIHLFWCVPERGHDFSKHETASAVSNQWGWAHRDSGRLL
TTLRCAALELGMMSPKQLEQETRDSAFPSIADKRQVTQTV*
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mRNA from alignment at H-elongata_contig10756:5382..7865-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10756.622.1 ID=mRNA_H-elongata_contig10756.622.1|Name=mRNA_H-elongata_contig10756.622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2484bp|location=Sequence derived from alignment at H-elongata_contig10756:5382..7865- (Himanthalia elongata Himel1 dioecious)
ATAATTTTAAAAAAACAGACCGATCTGGAATTCACCATTCATCTCTTCTG
GTGTGTCCCCGAGCGAGGACATGACTTTTCAAAACATGAGACCGGTGAGA
TCTACAGACCACATGAAGTACAATCGGTCTGGGAAGTGTGCACACCTACG
AAATACGAGGCAGAGAGTAATCGTCGATGTCGCTCAAACGAACAGTCCCG
AAGCGGTGAAATACTACTTTGGAGCAAAGCTCCAGCATAGCACAGTGATC
CAGCCTTGTTGTCTAGTGTGGCGAATCCCGACCTAACACGCTGGATTAGT
CCTCTATGAGATCTAAGGTCGTGCTGGGGCGGCAGAATGTCGAAGACGTG
GTGGCATTGGTGTTTCTCTGGGGTGTAAATGATGCACTGTATACCCACAC
ACAACGGAGGAGGCAGTGAGGGACGTTCTTACGTCTCGGGCAGGCACCAC
ACATTACGCGTGACGAATACAGCAGTGGTAATCTATAGGATGTTGTTGCG
GAGTTACGAAGCTTTTGGGTTTGGCGGTCTGTACTCGCACATGCATGCGC
GGTTTTACACACATATATGCGTTCTCCGTACCTATAAACATAAACTGTTT
TTTTTCGGGACTTCCAAATGATTGTGCTGGATAAAAGACTTTATATCACA
ATTTCAGGCCCGTTCCACACGGACGAAAAAACGTCTCATAATCTGCGAAG
AATTGCCGGAAGTTTTAGGTGCTTTCAACATTTTTTCCGATAAAAGTTCG
TCCGTTCTACACGAGTTATCAGTAGATTATGAAGTCAACAATTATTAGTT
GCAAACACAAACGTTCGAATATGTTCTAATTTTAATTTTGAAAAACAGAT
ACTGAGTACAAGTATCTACTAGTATATAGTTATTGCCTCCAATACTGTCT
GTGACTGTATCGCACATGCCCGCCACTCTATATCCATAGTCAGTGTGAGG
AAAGAGAGGGATACAATAATTGGTCCTTGGGGTTACCTGAATAGGCTGCA
CGCGTTACTTAAGCTACCTTAAGGACTGCTGGCTCAGTGTCGGTGAACCG
GTACGCAATTACGTGGCCTGATGAAATCGGGATTGGGCCGATAGCGGTTG
ACAGTAGTAGATATGGACGCCGTCGCAGAAAACGAGATGATCGAGATAAT
CCTGGGAGTACGTACCACACTCAGCCTGGGTTGAGAGAATGAGCAGGCTG
ACGCAGGATGGGACCGCCGAACTCGTCTCGCGAGACTAAATTCTCAGGCG
CGAACGGGGACAGGGGAAAATGAGTTTTCCTTGTTCAGCTGACCACAAGC
AGGAGGCAACCAAATCCGGTTGATCTTACTCTTGCTATATATATATATAT
ATATATATATATGACGACCACAAGCACACAAGAATAGTTAACGCTGTGGT
GTTCGCTCGGCTGCAGTTACGACCCGACTACGTGCGCTAGTTTGTTGAAC
GAGAGCCGGTCTACACGATAGCAGCGTTTGAAAAGGTCGAACTTCTCTGC
GTGGGCGAATATGTAGGCGAGGTTAGGGCGTCTGTACCGGGTATGTACTC
CCACACTGCGTTGCTGCTACTGATGCATCCCTTTTTTTAAACATGAACTC
ATTCCAACCCTCCGAACATCCACACACCCTGCTTGCTGCACTTTTCACTC
GCTCTATTTCAACGAGGGCCGGTCTACACGATAGCAGCATTTGACAAGGT
CGACCTTCTCTGCGTGAGCGAAGATGTAGGCGAGGTTGGGGTGTCTATAC
CGGATCTGTACTCCCACACTGCGATGCTGCTACTGATGCACCCCGGTACA
TATTTTTATTTAAAAAATGAACTCATTCCAACCCTCCGAACATCCACACA
GCCTAATTGCTGCACTTTTCTCTCCTCTATTTCAACGAGAGCCGGTCTAC
ACGATAGCAGCTTTTGAAAATAGGTCGACCTTCTCCGTGTTGGCAAATAT
GTAGGCGAGGTTGGAGCGTCTGTATCCCTCTGACTCCTCACGATCGACTG
GAAGGGACAGGAGCGAAGCAGTGTCGGCCACCGTTGTTGGTGCCAGAACC
ATAACAAAACTCACAATAACGATGATCATCTCGCCTTCCTCGTCCTCTTC
GTCCTGCCGCTTTTCCCGCCGCTGCTGCTCGACCACAGCATCAGCAGTGT
CAAATCAGTGGGGATGGGCTCACCGAGACAGTGGTCGGCTCCTCACCACG
CTGCGCTGCGCTGCTTTAGAGCTGGGCATGATGTCTCCCAAGCAGCTAGA
GCAAGAAACAAGAGACTCTGCCTTTCCGAGTATTGCAGACAAGCGCCAGG
TTACGCAGACCGTTTAATGTAGAGAGCTGCGATACACAAGACAACACCCG
CGATTGTTGCCTCGAGCCAACTTGTTCGTGTGACGCGTCAGTGCGCCGTG
CTAGAGACGGTATACCTGTCCTGCGTGCCAAGCATCACCCATAACCCTTT
TAAAAAAATCTTACTTACTTTCGACAAACTTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig10756:5382..7865-

>mRNA_H-elongata_contig10756.622.1 ID=mRNA_H-elongata_contig10756.622.1|Name=mRNA_H-elongata_contig10756.622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig10756:5382..7865- (Himanthalia elongata Himel1 dioecious)
ATAATTTTAAAAAAACAGACCGATCTGGAATTCACCATTCATCTCTTCTG
GTGTGTCCCCGAGCGAGGACATGACTTTTCAAAACATGAGACCGATAATT
TTAAAAAAACAGACCGATCTGGAATTCACCATTCATCTCTTCTGGTGTGT
CCCCGAGCGAGGACATGACTTTTCAAAACATGAGACCGCATCAGCAGTGT
CAAATCAGTGGGGATGGGCTCACCGAGACAGTGGTCGGCTCCTCACCACG
CTGCGCTGCGCTGCTTTAGAGCTGGGCATGATGTCTCCCAAGCAGCTAGA
GCAAGAAACAAGAGACTCTGCCTTTCCGAGTATTGCAGACAAGCGCCAGG
TTACGCAGACCGTTTAACATCAGCAGTGTCAAATCAGTGGGGATGGGCTC
ACCGAGACAGTGGTCGGCTCCTCACCACGCTGCGCTGCGCTGCTTTAGAG
CTGGGCATGATGTCTCCCAAGCAGCTAGAGCAAGAAACAAGAGACTCTGC
CTTTCCGAGTATTGCAGACAAGCGCCAGGTTACGCAGACCGTTTAA
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