prot_H-elongata_contig107360.608.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig107360.608.1
Unique Nameprot_H-elongata_contig107360.608.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.000e-32
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y   +++R+GM+
Sbjct:    4 KLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGRDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQ 124          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.900e-31
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL  SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y   +++R+GM+
Sbjct:    4 KLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQ 124          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.330e-31
Identity = 60/121 (49.59%), Postives = 87/121 (71.90%), Query Frame = 0
Query:    1 MKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGM 121
            M+L++SLYGL QSP NWF  +D  L  IGF P KSD CVY+Y+ +   V LTLYVDD+LL   +   ++ +KK+L  RF+M+DM +V  +LGM +  DR +GT+TISQ+ Y++ +++R+GM
Sbjct:  602 MQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGM 722          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.330e-31
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 0
Query:    1 MKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGM 121
            M+L++SLYGL QSP NWF  +D  L  IGF P KSD CVY+Y+ +   V LTLYVDD+LL   +   ++ +KK+L  RF+M+DM +V  +LGM +  DR +G +TISQ+ YT+ +++R+GM
Sbjct:  713 MQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGM 833          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.120e-30
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG+ V  D E+GT+ ISQ+ Y   +++R+GM+
Sbjct:    4 KLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQ 124          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.750e-30
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL++SLYGL QSP  W   ++  L + G++   SDPCVYI+       IL +YVDDIL+   +K ++++ KK+LM+ FEM+DM +V R++G+ V  D E GT+ ISQ  Y  D++QRYGM+
Sbjct:   53 KLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGME 173          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.440e-30
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y   +++R+GM+
Sbjct:  487 KLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQ 607          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 8.560e-30
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 0
Query:    1 MKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGM 121
            MKL +SLYGL QSP NWF  +D  +  IGF   KSDPCVY+Y+     + LTLYVDD+LL       ++ +K +L  RF+M+D+ + S +LGM +  DRE  T+TISQ+ Y + +++R+GM
Sbjct:   65 MKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGM 185          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 9.700e-30
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMK 122
            KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y    ++R+GM+
Sbjct:  123 KLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQ 243          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.380e-29
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 0
Query:    2 KLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS 123
            KL+ SLYGL QSP  W+  +D  L VIGFRP +SDPCVYI+      VILTLYV+DIL+      L+  LKK+L +RFE++D+ +V  ILGM VT   E GT+ +SQK Y + +++  GM++
Sbjct:  525 KLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMEN 646          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRT7_9PHAE2.000e-3249.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE1.900e-3149.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE3.330e-3149.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE3.330e-3149.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE1.120e-3049.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG4_9PHAE1.750e-3046.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE7.440e-3049.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE8.560e-3047.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE9.700e-3049.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE1.380e-2950.00Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..121
e-value: 2.4E-27
score: 96.2
NoneNo IPR availablePANTHERPTHR11439:SF280coord: 2..117
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 7..109
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107360contigH-elongata_contig107360:761..1132 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107360.608.1mRNA_H-elongata_contig107360.608.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig107360 53..1135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig107360.608.1 ID=prot_H-elongata_contig107360.608.1|Name=mRNA_H-elongata_contig107360.608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVI
LTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDRE
KGTITISQKDYTEDVVQRYGMKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like