mRNA_H-elongata_contig107360.608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107360.608.1
Unique NamemRNA_H-elongata_contig107360.608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 8.640e-74
Identity = 138/361 (38.23%), Postives = 181/361 (50.14%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI-------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VMKL +SLYGL QSP NWF  +D  +  IGF   KSDPCVY+Y+     + LTLYVDD+LL       ++ +K +L  RF+M+D+ + S +LGM +  DRE  T+TISQ+ Y + +++R+GM   KPT TPG G E+S   PE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR +                                                                                                             F  +P+Y DNT+ LH  GNR+ S R KHIALR+FF++ELV EGKISIHY  TED LAD+GTKH +KHR
Sbjct:   64 VMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHR 424          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 5.490e-73
Identity = 134/309 (43.37%), Postives = 180/309 (58.25%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI---------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VM+L++SLYGL QSP NWF  +D  L  IGF P +SD CVY+Y+ +   V LTLYVDD+LL   +  ++  +K +L  R +M+DM +V  +LGM +  DR +GT+T SQ+ Y++ +++R+GM   KPT TPG G ELS   PE+ LL EEE RRYQ I G +MY+AQV RYDI+YA  QLAR +                                                         F  VPLY DNT+ LH  GNR+ S   K IALR+ +++ELV EG++SIHY+ T+  +AD+GTKHL+KHR
Sbjct:  900 VMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLRTRTTEKLIASVLAMKEAVFCSNMVSELGFGKEFAQVPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNKHR 1208          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.990e-69
Identity = 139/361 (38.50%), Postives = 182/361 (50.42%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI-------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VMKL +SLYGL QSP NWF  +D  L  IGF   KSDPCVY+Y+     + LTLYVDD+LL       ++ +K +L  RF+M+D+ + S +LGM +  DRE  T+TISQ+ Y + +++R+G+   KPT TPG G E+S   PE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR +                                                                                                             F  +P+Y DNT+ LH  GNR+ S R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KHR
Sbjct: 1293 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHR 1653          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 3.180e-69
Identity = 138/361 (38.23%), Postives = 181/361 (50.14%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI-------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VMKL +SLYGL QSP NWF  +D  L  IGF   KSDPCVY+Y+     + LTLYVDD+LL       ++ +K +L  RF+M+D+ + S +L M +  DRE  T+TISQ+ Y + +++R+GM   KPT TPG G E+S   PE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR +                                                                                                             F  +P+Y DNT+ LH  GNR+ S R KHIALR+FF++ELV EGKISIHYV+TED LAD+GTKH + HR
Sbjct:  624 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHR 984          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.470e-68
Identity = 144/374 (38.50%), Postives = 184/374 (49.20%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLS----ASKTLLNKLKK---------QLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI-------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VMKL +SLYGL QSP NWF  +D  L  IGF   KSDPCVY+Y+     + LTLYVDD+LL      A K LL+   K         +L  RF+M+D+ + S  LGM +  DRE  T+TISQ+ Y + +++R+GM   KPT TPG G E+S   PE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR++                                                                                                             F  +P+Y DNT+ LH  GNR+ S R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KHR
Sbjct:  272 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHR 645          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.250e-61
Identity = 128/304 (42.11%), Postives = 169/304 (55.59%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDIL------------YAVNQLARAIFGSVPLYI---------------------DN------------TSALHVAGNRT*-------SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            VMKL +SLYGL QSP NWF  +D  L  IGF   KSDPCVY+Y+     + LTLYVDD+LL       ++ +K +L  RF+M+D+ + S +LGM +  DRE  T+TISQ+ Y + +++R+GM   KPT TPG G E+S   P+  LL+E+E R+YQ I G+ MY+A   +Y  L             A     R + G++   I                     DN             + +  AG R+        S R KHIALR+FFV+ELV EGKISIHYV TED LAD+GTKH +KHR
Sbjct: 1458 VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQYTWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTASYLTMLVNAPMSXAGERSHELQVRAASSRTKHIALRFFFVRELVTEGKISIHYVPTEDNLADIGTKHFNKHR 1761          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.070e-61
Identity = 126/360 (35.00%), Postives = 179/360 (49.72%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            V KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y    ++R+GM+   P  T G G E+S N P++++L   +K+ YQ++TG+++YLAQ T++D+ YA  QL++A                                                                                                             FGSVP+  D+T AL VAGN   S R KH+ALRYFF++ELV  G+I++H+  +E QLAD+ TK+L KHR
Sbjct:  121 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 480          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.400e-60
Identity = 126/360 (35.00%), Postives = 178/360 (49.44%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            V KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG+ V  D E+GT+ ISQ+ Y   +++R+GM+   P  TPG G E+S N P++++L   EK+ YQ++TG+++YLAQ TR+D+ YA  QL++A                                                                                                             FGSVP+  D+T AL VAGN   S R  ++ALR FF++ELV  G+I++H+  +E QLAD+ TK+L KHR
Sbjct:    2 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 360          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.690e-60
Identity = 126/360 (35.00%), Postives = 180/360 (50.00%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            V KL+ SLYGL QS   W   LD  L V+G++  +SDPCVY+Y      VILT+YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y   +++R+GM+   P  TPG G E+S N P++++L   +K+ YQ++ G+++YLAQ TR+D+ YA  QL++A                                                                                                             FGSVP+  D+T AL VAGN   S R KH+ALRYFF++ELV  G+I++H+  +E QLAD+ TK+L KHR
Sbjct:  329 VYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 688          
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 2.040e-58
Identity = 126/368 (34.24%), Postives = 180/368 (48.91%), Query Frame = 1
Query:    1 VMKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVILTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDREKGTITISQKDYTEDVVQRYGMKS*KPTYTPGVGPELSLNHPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAI--------------------------------------------------------------------------------------------------------------------FGSVPLYIDNTSALHVAGNRT*SPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHR 756
            V KL+ SLYGL QSP  W   LD  L V G++  +SDPCVY+Y      VI ++YVDDIL+    + L+++ KK+L +RFEM+DM +V RILG++V  D E+GT+ ISQ+ Y   +++R+GM+   P  TPG G E+S N P++++L   +K+ YQ++TG+++YLAQ TR+D+ YA  QL++A                                                                                                                     FGSVP+  D+T AL VAGN   S R KH+ALRYFF++ELV  G+I++H+  +E QLAD+ TK+L KHR
Sbjct:  708 VYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR 1075          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107360.608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE8.640e-7438.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL30_9PHAE5.490e-7343.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.990e-6938.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE3.180e-6938.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.470e-6838.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE2.250e-6142.11Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KQD0_9PHAE6.070e-6135.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE1.400e-6035.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE3.690e-6035.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE2.040e-5834.24Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107360contigH-elongata_contig107360:53..1135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue6.8e-20
Seed eggNOG ortholog164328.Phyra87462
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107360.608.1prot_H-elongata_contig107360.608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107360 761..1132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.771418-UTR-H-elongata_contig107360:52..2571622929603.771418-UTR-H-elongata_contig107360:52..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 53..257 -
1691679087.9268098-UTR-H-elongata_contig107360:52..2571691679087.9268098-UTR-H-elongata_contig107360:52..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 53..257 -
1622929603.7858768-UTR-H-elongata_contig107360:584..7601622929603.7858768-UTR-H-elongata_contig107360:584..760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 585..760 -
1691679087.9363604-UTR-H-elongata_contig107360:584..7601691679087.9363604-UTR-H-elongata_contig107360:584..760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 585..760 -
1622929603.816824-UTR-H-elongata_contig107360:1132..11351622929603.816824-UTR-H-elongata_contig107360:1132..1135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 1133..1135 -
1691679087.9604266-UTR-H-elongata_contig107360:1132..11351691679087.9604266-UTR-H-elongata_contig107360:1132..1135Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107360 1133..1135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.805218-CDS-H-elongata_contig107360:760..11321622929603.805218-CDS-H-elongata_contig107360:760..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107360 761..1132 -
1691679087.9444194-CDS-H-elongata_contig107360:760..11321691679087.9444194-CDS-H-elongata_contig107360:760..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107360 761..1132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107360.608.1

>prot_H-elongata_contig107360.608.1 ID=prot_H-elongata_contig107360.608.1|Name=mRNA_H-elongata_contig107360.608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MKLKESLYGLRQSPKNWFGMLDVELAVIGFRPPKSDPCVYIYEDETGFVI
LTLYVDDILLLSASKTLLNKLKKQLMNRFEMSDMDDVSRILGMNVTHDRE
KGTITISQKDYTEDVVQRYGMKS*
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mRNA from alignment at H-elongata_contig107360:53..1135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107360.608.1 ID=mRNA_H-elongata_contig107360.608.1|Name=mRNA_H-elongata_contig107360.608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig107360:53..1135- (Himanthalia elongata Himel1 dioecious)
GTCATGAAGCTCAAGGAGAGCTTGTACGGTCTCCGACAGAGCCCGAAGAA CTGGTTCGGCATGTTGGACGTCGAGCTCGCCGTTATTGGTTTCCGCCCGC CCAAGTCGGATCCGTGCGTGTACATCTACGAGGATGAGACTGGCTTTGTT ATCCTGACGCTCTACGTGGACGACATCTTACTACTTAGCGCCAGCAAGAC TTTGCTTAACAAGCTCAAGAAGCAGCTGATGAACCGGTTCGAGATGTCCG ACATGGACGACGTGTCGAGAATCCTCGGGATGAACGTCACCCACGACCGT GAGAAGGGGACTATCACCATTAGTCAGAAGGATTACACGGAGGACGTGGT GCAGCGCTACGGTATGAAAAGCTGAAAGCCCACGTACACCCCCGGAGTAG GGCCAGAGCTGTCTCTAAACCACCCGGAGGAGAAGCTACTGAACGAGGAG GAGAAGCGGCGCTACCAGGCAATCACTGGAGCCGTTATGTACCTTGCACA GGTCACCCGCTACGATATTCTCTACGCGGTCAATCAGCTGGCGAGGGCCA TGTCCAAGCCCGCGAAAGCTCATATGGGGGCGGCCAAGCACCTGCTTTGA TACTTGGCCGGATCCGCAGACTTCTTCATCACCTACAAGCAAGGCGGTCT TATGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAACAACCCAGACAACG GAAGATCTACGTTATCGTACATCGTGATGCTGGCCAACGCCTCGATCAGC TTCAAAGTGGGACTGCAGGGGCTGACCGTACAGTCCACGATGGAGGCAGA GTTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGTTGTTCTGATCCAACA TAATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGTAGCGTGCCGCTGTAC ATTGACAACACGTCGGCACTGCATGTCGCCGGCAACCGCACCTAAAGTCC TCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGAGCTGGTAG AGGAGGGTAAGATCAGCATCCACTACGTCAAGACCGAGGATCAGTTGGCG GACTTGGGCACCAAGCACCTTAGCAAGCACCGT
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Coding sequence (CDS) from alignment at H-elongata_contig107360:53..1135-

>mRNA_H-elongata_contig107360.608.1 ID=mRNA_H-elongata_contig107360.608.1|Name=mRNA_H-elongata_contig107360.608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig107360:53..1135- (Himanthalia elongata Himel1 dioecious)
ATGAAGCTCAAGGAGAGCTTGTACGGTCTCCGACAGAGCCCGAAGAACTG
GTTCGGCATGTTGGACGTCGAGCTCGCCGTTATTGGTTTCCGCCCGCCCA
AGTCGGATCCGTGCGTGTACATCTACGAGGATGAGACTGGCTTTGTTATC
CTGACGCTCTACGTGGACGACATCTTACTACTTAGCGCCAGCAAGACTTT
GCTTAACAAGCTCAAGAAGCAGCTGATGAACCGGTTCGAGATGTCCGACA
TGGACGACGTGTCGAGAATCCTCGGGATGAACGTCACCCACGACCGTGAG
AAGGGGACTATCACCATTAGTCAGAAGGATTACACGGAGGACGTGGTGCA
GCGCTACGGTATGAAAAGCTGAATGAAGCTCAAGGAGAGCTTGTACGGTC
TCCGACAGAGCCCGAAGAACTGGTTCGGCATGTTGGACGTCGAGCTCGCC
GTTATTGGTTTCCGCCCGCCCAAGTCGGATCCGTGCGTGTACATCTACGA
GGATGAGACTGGCTTTGTTATCCTGACGCTCTACGTGGACGACATCTTAC
TACTTAGCGCCAGCAAGACTTTGCTTAACAAGCTCAAGAAGCAGCTGATG
AACCGGTTCGAGATGTCCGACATGGACGACGTGTCGAGAATCCTCGGGAT
GAACGTCACCCACGACCGTGAGAAGGGGACTATCACCATTAGTCAGAAGG
ATTACACGGAGGACGTGGTGCAGCGCTACGGTATGAAAAGCTGA
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