mRNA_H-elongata_contig100011.6.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100011.6.1
Unique NamemRNA_H-elongata_contig100011.6.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.320e-46
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNK+SLENELINLRLTSKQ QR AIKC KNE AAKAKLR+AIKAGNIEGARIYGQNAIREKNQ+LNCLRLSSRIDAV SRLETAIRMKQV
Sbjct:    1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQV 91
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S1Z7S6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV)

HSP 1 Score: 137 bits (346), Expect = 5.680e-39
Identity = 72/91 (79.12%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNKISLE+ELINLR+TSKQMQRSA KC KNE AA  KL+ AIK GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM QV
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQV 91
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S4MGQ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGQ3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.110e-37
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGN +SLE+ELINLR+TSKQMQRSA KC KNE AA  KL+ AIK+GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM  V
Sbjct:    1 MGNSVSLEDELINLRITSKQMQRSAKKCEKNEKAAIEKLKKAIKSGNPEGARIYGQDAIREKNQALNCMRMASRIDAVASRIETAVRMNTV 91
[Close]
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: B8C7T4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7T4_THAPS)

HSP 1 Score: 131 bits (329), Expect = 2.170e-36
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGN ISLE ELINLR+TSKQMQRS+ KC KNE AA  KL+ AIK GN EGARIY Q+AIREKNQALNCLRL+SRIDAV SRLETA+RM  V
Sbjct:    1 MGNSISLEEELINLRMTSKQMQRSSKKCEKNEKAAVDKLKKAIKQGNSEGARIYAQDAIREKNQALNCLRLASRIDAVASRLETAVRMNTV 91
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.680e-36
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNK+SLE ELINL+LT+KQMQRS+ KCNK EAAAKAK++ AI+ GN+EGA+I  QNAIREKNQ+LN LRL+SRIDAV +RLETA+RMKQV
Sbjct:    1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQV 91
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S2SCB7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCB7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.270e-34
Identity = 68/91 (74.73%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNKISLE+ELINLR+TSKQMQRSA K  KNE A   KL+ AIK GN EGA+IYGQ+AIREKNQALNC R++SR+DAV SR+ETAIRM +V
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKSEKNEKANIEKLKQAIKKGNSEGAKIYGQSAIREKNQALNCQRMASRVDAVSSRIETAIRMGEV 91
[Close]
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.800e-34
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNK+SLE ELIN+RLTSKQMQR++ KC KNEA+AK +++ +I+ GN+EGA+I  QNAIREKNQALN LRLSSRIDAV SRLETAIR KQ+
Sbjct:    1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQM 91
[Close]
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A1E7FAS9_9STRA (Charged multivesicular body protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAS9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.230e-33
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGN++SLE+E++NLR+ SKQMQRSA KC KNE A+  KL+ AI+ GN EGARIYGQ+AIREKNQALN LR++SRIDA  SR+ETA+RM QV
Sbjct:    1 MGNRVSLEDEMVNLRIVSKQMQRSAKKCEKNEKASMDKLKKAIQKGNHEGARIYGQDAIREKNQALNHLRMASRIDACSSRIETAVRMGQV 91
[Close]
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7R9WCX5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCX5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.780e-33
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    4 GNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            G K SLE+ELINLR+TSK MQRSA KC KNE AA  KL+ AIK GN EGARI+GQ+AIREKNQALNCL+++SRIDAV SR+ETA+RM  V
Sbjct:   13 GGKPSLEDELINLRITSKTMQRSAKKCEKNEKAAIEKLKKAIKQGNAEGARIHGQDAIREKNQALNCLKMASRIDAVSSRIETAVRMGTV 102
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BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S2L033_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.230e-32
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
            MGNKISLE+ELINLR+TSK M RS++KC K+E AA  +L+ AIK GN EGARIY Q+AIREKNQA+N LR++SRIDAV +RLETAIRM  V
Sbjct:    1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUT2_ECTSI3.320e-4691.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1Z7S6_TRICV5.680e-3979.12Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4MGQ3_9STRA5.110e-3775.82Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8C7T4_THAPS2.170e-3678.02Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A836C887_9STRA2.680e-3675.82Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2SCB7_9STRA1.270e-3474.73Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A836CEV0_9STRA3.800e-3473.63Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1E7FAS9_9STRA3.230e-3370.33Charged multivesicular body protein n=1 Tax=Fragil... [more]
A0A7R9WCX5_9STRA5.780e-3373.33Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2L033_9STRA1.230e-3271.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100011contigH-elongata_contig100011:909..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.4e-36
Seed eggNOG ortholog2880.D7FUT2
Preferred nameCHMP1A
KEGG koko:K12197,ko:K16230
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005815,GO:0005856,GO:0006323,GO:0006355,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010824,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016363,GO:0016458,GO:0016787,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0021549,GO:0022037,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0030261,GO:0030496,GO:0030902,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034399,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0045184,GO:0045324,GO:0045786,GO:0045892,GO:0045934,GO:0046605,GO:0046755,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048285,GO:0048475,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070013,GO:0070507,GO:0070727,GO:0070925,GO:0071103,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904896,GO:1904903,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3232@2759
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.1800668-CDS-H-elongata_contig100011:908..12111622929543.1800668-CDS-H-elongata_contig100011:908..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100011 909..1211 -
1691679061.6117523-CDS-H-elongata_contig100011:908..12111691679061.6117523-CDS-H-elongata_contig100011:908..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100011 909..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100011.6.1prot_H-elongata_contig100011.6.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100011 909..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100011.6.1

>prot_H-elongata_contig100011.6.1 ID=prot_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEG
ARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQVIWERLMLKV
*
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mRNA from alignment at H-elongata_contig100011:909..1211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious)
ATGGGAAACAAGATTTCTCTGGAAAATGAGCTCATCAACCTGAGGCTAAC
CTCGAAGCAAATGCAGAGGAGCGCTATCAAGTGCAATAAGAATGAGGCGG
CCGCCAAGGCGAAGCTGCGCGACGCGATTAAGGCAGGCAACATCGAAGGC
GCCCGCATCTACGGCCAAAATGCTATTCGAGAAAAGAACCAGGCGCTAAA
TTGCTTAAGGCTAAGTAGTCGGATAGATGCGGTGGGCTCGCGGCTGGAGA
CAGCCATTCGGATGAAACAGGTGATTTGGGAGCGTCTGATGTTGAAAGTT
TAA
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Coding sequence (CDS) from alignment at H-elongata_contig100011:909..1211-

>mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious)
ATGGGAAACAAGATTTCTCTGGAAAATGAGCTCATCAACCTGAGGCTAAC
CTCGAAGCAAATGCAGAGGAGCGCTATCAAGTGCAATAAGAATGAGGCGG
CCGCCAAGGCGAAGCTGCGCGACGCGATTAAGGCAGGCAACATCGAAGGC
GCCCGCATCTACGGCCAAAATGCTATTCGAGAAAAGAACCAGGCGCTAAA
TTGCTTAAGGCTAAGTAGTCGGATAGATGCGGTGGGCTCGCGGCTGGAGA
CAGCCATTCGGATGAAACAGGTGATTTGGGAGCGTCTGATGTTGAAAGTT
TAAATGGGAAACAAGATTTCTCTGGAAAATGAGCTCATCAACCTGAGGCT
AACCTCGAAGCAAATGCAGAGGAGCGCTATCAAGTGCAATAAGAATGAGG
CGGCCGCCAAGGCGAAGCTGCGCGACGCGATTAAGGCAGGCAACATCGAA
GGCGCCCGCATCTACGGCCAAAATGCTATTCGAGAAAAGAACCAGGCGCT
AAATTGCTTAAGGCTAAGTAGTCGGATAGATGCGGTGGGCTCGCGGCTGG
AGACAGCCATTCGGATGAAACAGGTGATTTGGGAGCGTCTGATGTTGAAA
GTTTAA
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