prot_H-elongata_contig100576.59.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100576.59.1
Unique Nameprot_H-elongata_contig100576.59.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length143
Homology
[Close]
BLAST of mRNA_H-elongata_contig100576.59.1 vs. uniprot
Match: A0A6H5L576_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L576_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.210e-7
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:   33 FRKEARGHNKDALLPYANKTAEFYLPPGVSAVIFRTSVLLAHIGRYDE 80
            F KEARG  K+AL  YA+  ++  L PG SAVIFRTSVLLA++GR DE
Sbjct:  193 FCKEARGDYKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDE 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100576.59.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L576_9PHAE4.210e-762.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100576contigH-elongata_contig100576:1038..1713 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100576.59.1mRNA_H-elongata_contig100576.59.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100576 1038..1923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100576.59.1 ID=prot_H-elongata_contig100576.59.1|Name=mRNA_H-elongata_contig100576.59.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MTDLLLPGTAFLEEALSAPENLDDLVNRTQVGFRKEARGHNKDALLPYAN
KTAEFYLPPGVSAVIFRTSVLLAHIGRYDEVRLVDIGLWTRVELEALGRA
LGSNLRWLKSCFVRVSSRGAYLRISDDKSKGKGVYMSVPTGY*
back to top