prot_H-elongata_contig10715.594.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10715.594.1
Unique Nameprot_H-elongata_contig10715.594.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
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BLAST of mRNA_H-elongata_contig10715.594.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-5
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:    2 RATQMTENALGPEHHGVATVLKFRADMYVAQGREAEAESLYERSQIIKEK 51
            R+  +T   +GPEH  VATVLK RA +   +G++AEAE LYERSQ I+EK
Sbjct: 1653 RSQAITAKVIGPEHPDVATVLKNRALLLAYEGKDAEAEPLYERSQAIQEK 1702
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10715.594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIH9_9PHAE2.230e-556.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 19..52
e-value: 27.0
score: 11.2
coord: 144..177
e-value: 6.0
score: 15.8
coord: 102..135
e-value: 1.1
score: 18.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 68..186
e-value: 1.8E-36
score: 127.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..65
e-value: 2.9E-11
score: 44.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 72..175
NoneNo IPR availablePFAMPF13374TPR_10coord: 27..57
e-value: 6.3E-4
score: 19.5
NoneNo IPR availablePFAMPF13424TPR_12coord: 100..175
e-value: 4.6E-19
score: 68.5
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 72..186
coord: 3..60
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 72..186
coord: 3..60
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 102..177
score: 8.722

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10715contigH-elongata_contig10715:134..2235 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10715.594.1mRNA_H-elongata_contig10715.594.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10715 134..2259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10715.594.1 ID=prot_H-elongata_contig10715.594.1|Name=mRNA_H-elongata_contig10715.594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MRATQMTENALGPEHHGVATVLKFRADMYVAQGREAEAESLYERSQIIKE
KRLGPDHLELFTRTSPPTVSVSHDRYAEAETLFLQSQILREKALGPEHLD
VSNVLNDRALSIYQQGRYDEAESFYNRSYAIREKVLGPDHLDVAQSLRNR
AVSISKQDRYTKAEPLYRRAQAIRETILGPEHMDVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom