mRNA_H-elongata_contig107144.593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107144.593.1
Unique NamemRNA_H-elongata_contig107144.593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107144.593.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.630e-21
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:  133 ARTSQLKAFMANANTLRNALNVSKLWISRRLLIVESALLRTYGGVSLTARTQDAIKQGRRVRMR 324
            ARTSQL+AFM NA+T R+ L+VSKLWISRR+L+ E+ LLR YGGV  TAR QDAI+QGRRVR+R
Sbjct:  178 ARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLR 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107144.593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR5_ECTSI8.630e-2171.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107144contigH-elongata_contig107144:1508..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004270.1
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107144.593.1prot_H-elongata_contig107144.593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107144 1508..2074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.3037665-CDS-H-elongata_contig107144:1507..16521622929602.3037665-CDS-H-elongata_contig107144:1507..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107144 1508..1652 -
1691679087.2025256-CDS-H-elongata_contig107144:1507..16521691679087.2025256-CDS-H-elongata_contig107144:1507..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107144 1508..1652 -
1622929602.3360426-CDS-H-elongata_contig107144:1904..20741622929602.3360426-CDS-H-elongata_contig107144:1904..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107144 1905..2074 -
1691679087.2194226-CDS-H-elongata_contig107144:1904..20741691679087.2194226-CDS-H-elongata_contig107144:1904..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107144 1905..2074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929602.3507392-UTR-H-elongata_contig107144:2074..20861622929602.3507392-UTR-H-elongata_contig107144:2074..2086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107144 2075..2086 -
1691679087.22823-UTR-H-elongata_contig107144:2074..20861691679087.22823-UTR-H-elongata_contig107144:2074..2086Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107144 2075..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107144.593.1

>prot_H-elongata_contig107144.593.1 ID=prot_H-elongata_contig107144.593.1|Name=mRNA_H-elongata_contig107144.593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MIKEAQGIHRAGGIAGGGYAGGGGPASGVHVPAVEIAAVEARTSQLKAFM
ANANTLRNALNVSKLWISRRLLIVESALLRTYGGVSLTARTQDAIKQGRR
VRMR*
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mRNA from alignment at H-elongata_contig107144:1508..2086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107144.593.1 ID=mRNA_H-elongata_contig107144.593.1|Name=mRNA_H-elongata_contig107144.593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig107144:1508..2086- (Himanthalia elongata Himel1 dioecious)
AAGATCGTCGTGATGATCAAGGAGGCTCAAGGGATTCACAGGGCTGGAGG
CATTGCAGGAGGTGGATATGCCGGCGGTGGTGGCCCCGCCAGCGGTGTTC
ACGTCCCAGCAGTGGAAATCGCGGCGGTAGAAGCTCGAACCAGTCAGCTC
AAGGCATTTATGGCCAACGCGAACACTTTAAGGTTAGTGGACACTTGAGA
GTATTATTTTCAGTGCGAAAGGAAGATTCTGCCGCGTCCTAGCCACCCAC
TAGGCACCCCAAGGCAGCAAGTTGTTCAACTGCCCTTTTTTAGGGCTTTC
ACTGATTGAGCTAAGAAATGTACAACTGTGCCTGCGGTCAACACGGGACA
CTACTCAAAAAGCTTAAAAGGCACCCGCGGGACAGATCCATCCCCGTATC
GCGCCTTTTTTTTATCACGTATACCGCCACACAGAAACGCGCTTAACGTA
TCGAAGTTGTGGATCAGTCGCCGGCTACTAATAGTTGAGTCGGCACTTCT
AAGGACCTACGGAGGCGTTAGTCTGACAGCGAGAACTCAGGACGCGATCA
AACAGGGCCGGAGAGTGCGCATGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig107144:1508..2086-

>mRNA_H-elongata_contig107144.593.1 ID=mRNA_H-elongata_contig107144.593.1|Name=mRNA_H-elongata_contig107144.593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig107144:1508..2086- (Himanthalia elongata Himel1 dioecious)
ATGATCAAGGAGGCTCAAGGGATTCACAGGGCTGGAGGCATTGCAGGAGG
TGGATATGCCGGCGGTGGTGGCCCCGCCAGCGGTGTTCACGTCCCAGCAG
TGGAAATCGCGGCGGTAGAAGCTCGAACCAGTCAGCTCAAGGCATTTATG
GCCAACGCGAACACTTTAAGATGATCAAGGAGGCTCAAGGGATTCACAGG
GCTGGAGGCATTGCAGGAGGTGGATATGCCGGCGGTGGTGGCCCCGCCAG
CGGTGTTCACGTCCCAGCAGTGGAAATCGCGGCGGTAGAAGCTCGAACCA
GTCAGCTCAAGGCATTTATGGCCAACGCGAACACTTTAAGAAACGCGCTT
AACGTATCGAAGTTGTGGATCAGTCGCCGGCTACTAATAGTTGAGTCGGC
ACTTCTAAGGACCTACGGAGGCGTTAGTCTGACAGCGAGAACTCAGGACG
CGATCAAACAGGGCCGGAGAGTGCGCATGAGGTAGAAACGCGCTTAACGT
ATCGAAGTTGTGGATCAGTCGCCGGCTACTAATAGTTGAGTCGGCACTTC
TAAGGACCTACGGAGGCGTTAGTCTGACAGCGAGAACTCAGGACGCGATC
AAACAGGGCCGGAGAGTGCGCATGAGGTAG
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