mRNA_H-elongata_contig10714.591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10714.591.1
Unique NamemRNA_H-elongata_contig10714.591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10714.591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10714contigH-elongata_contig10714:717..1936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size525
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10714.591.1prot_H-elongata_contig10714.591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10714 814..1901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.965747-UTR-H-elongata_contig10714:716..8131622929601.965747-UTR-H-elongata_contig10714:716..813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10714 717..813 -
1691679087.1034029-UTR-H-elongata_contig10714:716..8131691679087.1034029-UTR-H-elongata_contig10714:716..813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10714 717..813 -
1622929602.1135957-UTR-H-elongata_contig10714:1901..19361622929602.1135957-UTR-H-elongata_contig10714:1901..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10714 1902..1936 -
1691679087.1635067-UTR-H-elongata_contig10714:1901..19361691679087.1635067-UTR-H-elongata_contig10714:1901..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10714 1902..1936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.9774044-CDS-H-elongata_contig10714:813..9281622929601.9774044-CDS-H-elongata_contig10714:813..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 814..928 -
1691679087.1208627-CDS-H-elongata_contig10714:813..9281691679087.1208627-CDS-H-elongata_contig10714:813..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 814..928 -
1622929602.0186384-CDS-H-elongata_contig10714:948..10171622929602.0186384-CDS-H-elongata_contig10714:948..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 949..1017 -
1691679087.1355028-CDS-H-elongata_contig10714:948..10171691679087.1355028-CDS-H-elongata_contig10714:948..1017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 949..1017 -
1622929602.0606115-CDS-H-elongata_contig10714:1381..14521622929602.0606115-CDS-H-elongata_contig10714:1381..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 1382..1452 -
1691679087.1464815-CDS-H-elongata_contig10714:1381..14521691679087.1464815-CDS-H-elongata_contig10714:1381..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 1382..1452 -
1622929602.0977414-CDS-H-elongata_contig10714:1763..19011622929602.0977414-CDS-H-elongata_contig10714:1763..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 1764..1901 -
1691679087.1546917-CDS-H-elongata_contig10714:1763..19011691679087.1546917-CDS-H-elongata_contig10714:1763..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10714 1764..1901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10714.591.1

>prot_H-elongata_contig10714.591.1 ID=prot_H-elongata_contig10714.591.1|Name=mRNA_H-elongata_contig10714.591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MGGMGNSSSGGGVGGAGGILKGARERRDMLVEERRKLANLKKGALEVLNS
VATQLGPRFLVFDWHADSYRFDGDELIPRAISQVTATNLFTSTTARGAGD
AVERRRSHDIPVCLSPQSASSLVGTRCRGG*
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mRNA from alignment at H-elongata_contig10714:717..1936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10714.591.1 ID=mRNA_H-elongata_contig10714.591.1|Name=mRNA_H-elongata_contig10714.591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1220bp|location=Sequence derived from alignment at H-elongata_contig10714:717..1936- (Himanthalia elongata Himel1 dioecious)
CTTTGAGCGGAGACGAACGAAGTGTGGTCGGCGGAATGGGGGGCATGGGG
AATAGCAGCAGCGGCGGCGGCGTGGGCGGTGCGGGCGGTATACTCAAAGG
GGCGAGAGAAAGGAGAGATATGCTTGTGGAGGAGCGGAGAAAGCTAGCGA
ATTTGAAGAAGGGGGCACTTGAGGTGGTGACTCAGCGGAGTCCTCTGTTT
CTATATTTTTGCGTGTTTGGATGAAGATGCCTAGCTCATTAGACTCTAGG
TAGTTAGCTCCATACTAGGTGGTGGATTTTAGGGTCAGGATTAGGGTTGG
CGTTTGGTAGGGGGGAGACATGGGGGTGTTTTTCTTTAAAAGCGTATGAA
CTTGCATGTTTTAAGGTTAGGGTTTGTGGTGAGGTCGTCTCTCGCCCACA
CCGCGTCATCGGGTCCAACGTGTTACCCTAGCCCTAACCCACACAATCGA
AACGCCAAACGTCGCTCCCCGATTCCTCGTCTAGGTTTTGAACAGCGTGG
CCACGCAGCTGGGACCCCGATTCCTGGTTTTTGACTGGCACGCCGACAGT
TACAGGTACTTGTACAGGGGTTAGAGTTGGGGGATTTTACTGTACTATAC
TATACTATGCAATACTACACTCTTACCACACGATACGATACTATACTATT
TATTATCCTAAATACTCTATAGTATAGTACAATATAGTAGTATGTACTGT
AGGGAAGAAAAAGATTATAATGATGCTGATGATGATGATGATGATGCATT
CTTGCTGTCGATGATGCCTTGCGCCCAATCTCCGATCTATCTCGCCTCGC
AGTGTTTCTAAAGCAAGTATCAGCAGTTCTCTTAAAATTCTGCCGACGGA
GGAAGCAACACTCACCTCCCCTGTCCCCTGTCCCCTGTAAAACAAACGCC
TCCTTGCATGTTTTTCCAGATTTGATGGCGACGAGTTGATCCCACGCGCC
ATATCCCAGGTGACGGCGACGAACCTTTTTACATCAACCTCACCATACCA
GCCCTTTCAACAGCTCGGGGTGCCGGAGATGCGGTCGAACGGAGACGATC
TCACGATATCCCCGTCTGCTTATCGCCTCAGTCAGCATCATCACTCGTCG
GCACCAGGTGTAGAGGAGGTTAAGGGGTCCTCGCTGGCTGAGATGAACGA
GGGGGACCGGAGACAGGCAGTGTCGAACAGCGAGGTCAACAGTGAAGGTG
CTAGCAGGGAGAGGGCGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig10714:717..1936-

>mRNA_H-elongata_contig10714.591.1 ID=mRNA_H-elongata_contig10714.591.1|Name=mRNA_H-elongata_contig10714.591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig10714:717..1936- (Himanthalia elongata Himel1 dioecious)
ATGGGGGGCATGGGGAATAGCAGCAGCGGCGGCGGCGTGGGCGGTGCGGG
CGGTATACTCAAAGGGGCGAGAGAAAGGAGAGATATGCTTGTGGAGGAGC
GGAGAAAGCTAGCGAATTTGAAGAAGGGGGCACTTGAGATGGGGGGCATG
GGGAATAGCAGCAGCGGCGGCGGCGTGGGCGGTGCGGGCGGTATACTCAA
AGGGGCGAGAGAAAGGAGAGATATGCTTGTGGAGGAGCGGAGAAAGCTAG
CGAATTTGAAGAAGGGGGCACTTGAGGTTTTGAACAGCGTGGCCACGCAG
CTGGGACCCCGATTCCTGGTTTTTGACTGGCACGCCGACAGTTACAGGTT
TTGAACAGCGTGGCCACGCAGCTGGGACCCCGATTCCTGGTTTTTGACTG
GCACGCCGACAGTTACAGATTTGATGGCGACGAGTTGATCCCACGCGCCA
TATCCCAGGTGACGGCGACGAACCTTTTTACATCAACATTTGATGGCGAC
GAGTTGATCCCACGCGCCATATCCCAGGTGACGGCGACGAACCTTTTTAC
ATCAACAACAGCTCGGGGTGCCGGAGATGCGGTCGAACGGAGACGATCTC
ACGATATCCCCGTCTGCTTATCGCCTCAGTCAGCATCATCACTCGTCGGC
ACCAGGTGTAGAGGAGGTTAAAACAGCTCGGGGTGCCGGAGATGCGGTCG
AACGGAGACGATCTCACGATATCCCCGTCTGCTTATCGCCTCAGTCAGCA
TCATCACTCGTCGGCACCAGGTGTAGAGGAGGTTAA
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