mRNA_H-elongata_contig107125.588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107125.588.1
Unique NamemRNA_H-elongata_contig107125.588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107125.588.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.800e-52
Identity = 80/107 (74.77%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:    1 QVYLNPSRYLEFFDGETEGARKGMLSRWANEMNKKGTWADQLFINAVARAHQVANVRILVPSGKDTLRDEQGNYAGQGTAKKTYYMLHTGGSHFEALKVLGKVHPID 321
            QVY +P+RY++FFDGETEG RKGML +W   M +KG WADQLFINAVARAH+V N+RILVP   +TLRDEQGNYAGQGTA++TYYMLHTGG+HFEALK LG+V PID
Sbjct:   82 QVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEV-NIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPID 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107125.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L191_9PHAE5.800e-5274.77OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107125contigH-elongata_contig107125:630..2069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionOvarian tumour, otubain
Ec32 orthologEc-07_001140.2
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.7637644-CDS-H-elongata_contig107125:629..7911622929601.7637644-CDS-H-elongata_contig107125:629..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107125 630..791 -
1691679087.002013-CDS-H-elongata_contig107125:629..7911691679087.002013-CDS-H-elongata_contig107125:629..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107125 630..791 -
1622929601.7806737-CDS-H-elongata_contig107125:1910..20691622929601.7806737-CDS-H-elongata_contig107125:1910..2069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107125 1911..2069 -
1691679087.0126543-CDS-H-elongata_contig107125:1910..20691691679087.0126543-CDS-H-elongata_contig107125:1910..2069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107125 1911..2069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107125.588.1prot_H-elongata_contig107125.588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107125 630..2069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107125.588.1

>prot_H-elongata_contig107125.588.1 ID=prot_H-elongata_contig107125.588.1|Name=mRNA_H-elongata_contig107125.588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
QVYLNPSRYLEFFDGETEGARKGMLSRWANEMNKKGTWADQLFINAVARA
HQVANVRILVPSGKDTLRDEQGNYAGQGTAKKTYYMLHTGGSHFEALKVL
GKVHPID
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mRNA from alignment at H-elongata_contig107125:630..2069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107125.588.1 ID=mRNA_H-elongata_contig107125.588.1|Name=mRNA_H-elongata_contig107125.588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1440bp|location=Sequence derived from alignment at H-elongata_contig107125:630..2069- (Himanthalia elongata Himel1 dioecious)
CAGGTGTATCTCAACCCTTCTCGCTATTTGGAATTCTTCGACGGCGAGAC
CGAAGGCGCGCGCAAGGGCATGCTGTCTCGATGGGCGAATGAGATGAATA
AGAAGGGCACATGGGCGGACCAGCTCTTCATCAATGCCGTTGCTCGAGCG
CATCAGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGCATTACGCCTACT
GGACCTACTTCAATAGTATTTTCAATGCCGCTTGTGGTACGCTGAGCAGG
GAGGAAACTTGACGGAAGAATAAAAAACACAAAGAAAAAATAAGAGTCCC
TGGCTCCTCTACAGCAAGCAGCGACGCTCAAATCGTGTTTGAGTCAACGT
TCCAGGTGCTAGAAGAGCACCTCGTCAGTCTTTTGAGTGTGTCCAACCGC
AACTTCCAGGGCAGCAATAGCACTCTCAAGCGATGGCTTTGATTATCCTT
CTCTCCTATTAATAGCGGGTTTGGGACTGTCATCAGTAACGCCTGTTCCT
CTTTCTTCCTCAAAAGCATCTATGAACCTCCGCATTCCCTCTCTTACGAC
AATATATATATATATATCTCCCAGTCCCCCAAAATATCGAAAAAACGGGC
GTGTCCCTCTATACGTAGTCGATCCATTTTCTTCTTCCGATCCCGCCCTC
CTTTTCTTCGCGTCTTCGAGTGCCCCCAAAACGATCCACCGGGGCGTATC
CACACGATCGCTTGCGCCGCCCATGGTAGTCTTCTCGTCCTTGCAGCTGT
TTCGATGCTCTTGCAGCCCGGTCTCCTGTTGCACTTTGCTATACCAGAGG
ATGCAGAACGGTGGGAGAGGGAAGGAAAGGGGCGGAGGAGAAAAGGAGCG
ATAAATCAAAGAAGTCGCCTCCACCATTGCCTAGCCTATTTTTGTCCGGT
AGTAACGGCGTTCTGATTCAGGGGGACAGGGACAGGCGGGTCAGCGTGTG
CACCGTCGAACGGTTTTTGCCATGGAAATAGCGCTGAGTGCGGCGAGATT
AGGAATGACCAGGGGGGGTACACCGGTTCTCACTTCCTTCTCTCTCGGCA
AGCGCCGCAACACGCTCTGCTCTAGCCGTCGAAACCGCCGTTCGGGCAAA
ACCTCGTGTGGCCCCGCTCTCTCAGGCGTATTTTTCACCTGCTTCCACTT
ACTCCCTTTTTTGCACTCCCGAAACGCGTTACGCCGCAAAACAAGCTTTT
ACCGGCACATCCCTTTTCGGGCCTCAATTCGTTAACTCGTTTTCGTGCGT
GTTTTTCGTATTTTTCGTATTTTTTCAGGCGAACGTCCGGATTCTGGTCC
CTAGCGGTAAGGATACGCTTCGGGACGAGCAGGGCAACTATGCTGGTCAG
GGAACGGCGAAAAAGACCTACTACATGCTTCATACGGGCGGCAGCCACTT
TGAGGCACTCAAGGTGCTCGGGAAGGTCCATCCCATTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig107125:630..2069-

>mRNA_H-elongata_contig107125.588.1 ID=mRNA_H-elongata_contig107125.588.1|Name=mRNA_H-elongata_contig107125.588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig107125:630..2069- (Himanthalia elongata Himel1 dioecious)
CAGGTGTATCTCAACCCTTCTCGCTATTTGGAATTCTTCGACGGCGAGAC
CGAAGGCGCGCGCAAGGGCATGCTGTCTCGATGGGCGAATGAGATGAATA
AGAAGGGCACATGGGCGGACCAGCTCTTCATCAATGCCGTTGCTCGAGCG
CATCAGGTTCAGGTGTATCTCAACCCTTCTCGCTATTTGGAATTCTTCGA
CGGCGAGACCGAAGGCGCGCGCAAGGGCATGCTGTCTCGATGGGCGAATG
AGATGAATAAGAAGGGCACATGGGCGGACCAGCTCTTCATCAATGCCGTT
GCTCGAGCGCATCAGGTTGCGAACGTCCGGATTCTGGTCCCTAGCGGTAA
GGATACGCTTCGGGACGAGCAGGGCAACTATGCTGGTCAGGGAACGGCGA
AAAAGACCTACTACATGCTTCATACGGGCGGCAGCCACTTTGAGGCACTC
AAGGTGCTCGGGAAGGTCCATCCCATTGACGCGAACGTCCGGATTCTGGT
CCCTAGCGGTAAGGATACGCTTCGGGACGAGCAGGGCAACTATGCTGGTC
AGGGAACGGCGAAAAAGACCTACTACATGCTTCATACGGGCGGCAGCCAC
TTTGAGGCACTCAAGGTGCTCGGGAAGGTCCATCCCATTGAC
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