mRNA_H-elongata_contig107115.587.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: D7G845_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G845_ECTSI) HSP 1 Score: 385 bits (989), Expect = 5.000e-125 Identity = 206/249 (82.73%), Postives = 219/249 (87.95%), Query Frame = 1
Query: 1 QVMLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE----LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLS-------SANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDVVAVGLQDGAVALA 714
+VMLTYFRVLKRRPPPPALFP VMEGLAKFVHLVNLDTV+DLLDLLKDLLT +E LPLEAAL+CVLAAFRALQGPGRELQTDEAAFV ALYRRLPDLLR + GD +GRKT CV LV DCLDAALGKRRELSTARVAAMIKRLLS SANPAWG GAGGLLRGAHRL+LRYPAAQQLLENE DRPG+GPFRPD+ NPEHANALSSAAWELSLLR+S EPA+AAVA D+VA+G QD A LA
Sbjct: 587 EVMLTYFRVLKRRPPPPALFPAVMEGLAKFVHLVNLDTVQDLLDLLKDLLTEEEGEEELPLEAALHCVLAAFRALQGPGRELQTDEAAFVSALYRRLPDLLRPENGDASGRKTVLCVALVYDCLDAALGKRRELSTARVAAMIKRLLSISLQLTQSANPAWGLGAGGLLRGAHRLLLRYPAAQQLLENEQDRPGSGPFRPDLTNPEHANALSSAAWELSLLRNSCEPAIAAVAADIVALGSQDAASGLA 835
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A835YYK4_9STRA (CBF/Mak21 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK4_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.150e-52 Identity = 118/225 (52.44%), Postives = 142/225 (63.11%), Query Frame = 1
Query: 1 QVMLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDV 675
+V L YFRVLK PAL P VMEGLAKF HL+NLDTVEDLL LLK LL ++L EA+L+CVL AFR LQGPGRELQ D+ FV LY LP L D R A V L +C+D L KRRE S ARVAA +KR+L A A L+ AH L LRY A+Q+LENE DR AG + + +P+HAN +++ WELSLL+ S VA A+D+
Sbjct: 674 EVTLMYFRVLKNHR-HPALLPAVMEGLAKFAHLINLDTVEDLLALLKGLLREEKLTFEASLHCVLMAFRTLQGPGRELQVDDKEFVVRLYALLPRL-----SDAANR---AYVTLATECVDTVLVKRREHSPARVAAFLKRILGLALHFPSGEAKALIGVAHALALRYGPARQMLENEQDRAAAGAYSALVEDPDHANPFATSCWELSLLKFSYHADVAKAASDM 889
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A1E7EU90_9STRA (NOC3p-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU90_9STRA) HSP 1 Score: 166 bits (421), Expect = 3.060e-44 Identity = 102/220 (46.36%), Postives = 141/220 (64.09%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPP--ALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTH-KELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
V+LTYFR+LK L PV +EGLAKF HL+N+DTV DLLD+LK+LL +LPLEA+L CVL AF+ L+GPGRE+Q D+ ++ LY +L R + + RK T L+ CL AA KRRE ST RVAA +K+ + A A + L+ A +++ RYP+A QLLE+E D +G + PD+ +PEH+N S++AWEL++L+ P V
Sbjct: 359 VILTYFRILKSTDTKTRHGLLPVALEGLAKFSHLINIDTVVDLLDVLKELLVEVDDLPLEASLNCVLTAFQTLEGPGREMQIDQKEYITPLYSQLA----RVGSEGSSRKITE---LLLRCLTAAFIKRREYSTVRVAAFLKQTFTVAMHAPVYTSVPLIALARQILQRYPSAHQLLESESDVITSGQYTPDVDDPEHSNPFSTSAWELAVLKFHFHPQV 571
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S4K774_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K774_9STRA) HSP 1 Score: 165 bits (417), Expect = 7.300e-44 Identity = 103/233 (44.21%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHK-ELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAVAAVATDVVAVG 687
V LTYFRVLK L P +EGLAKF HL+N+DTVEDLLD+L+ +L LPL+AAL CVL AF+ L+GPGRE+Q D +V LY ++P L G +G + T L C+ +A +R+E S+ RVAA +KRL S+A A + +L +L+ RYP++Q+LLENE D +G + PD +PEH+N +++ WEL+LLR + V A D A G
Sbjct: 313 VTLTYFRVLKADGLSDGRAAELLPPALEGLAKFAHLINMDTVEDLLDVLRAMLKRAGSLPLDAALNCVLTAFQTLEGPGREMQIDPKEYVLPLYAQIPRL-----GSESGARHTD---LALRCMTSAFLRRKEYSSVRVAAFVKRLSSAALHAPPPASAAMLCFVRQLLARYPSSQRLLENEQDIVASGAYAPDAEDPEHSNPYAASVWELALLRFRAHAPVVAEQADGAAAG 537
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S4ABC0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABC0_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.050e-42 Identity = 96/220 (43.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA--LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
V+LTYFR+L+ + P +EGLAKF HL+N+DTV DLLD+LK+LL + LPLEA+L CVL AF+ L+GPGRE+Q D+ ++ LY +L +G K ++L+ CL+AA KRRE ST RVAA +K++ + A + + L+ A +++ RYP+ QLLE+E D +G + PD+ +PEH+N S++AWELS L+ P V
Sbjct: 349 VILTYFRILRSTDSKTRHDILPAALEGLAKFSHLINIDTVVDLLDVLKELLVIVDTLPLEASLNCVLTAFQTLEGPGREMQIDQKEYIAPLYSQLAR-----VGTEENSKKNTRILLL--CLNAAFIKRREYSTVRVAAFVKQMFTVAMHSPVYTSVPLIALARQILQRYPSVHQLLESESDVITSGTYTPDVADPEHSNPFSTSAWELSCLKFHVHPQV 561
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2EKH4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKH4_TRICV) HSP 1 Score: 153 bits (386), Expect = 1.530e-42 Identity = 96/213 (45.07%), Postives = 126/213 (59.15%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSL 627
V LTYFRVLK + L P +EGLAKF HL+N+DTV DLLD+LK +L + LP +AAL CVL AF+ L+GPGRE+Q D+ ++ LY +LP L+ D G L CL AA +RRE S RVAA ++RL S A A + +L +L+ RYP +LLENE D +G + P+ +PE NA + +AWELSL
Sbjct: 26 VTLTYFRVLKSDDMTDSKVAELLPPALEGLAKFAHLINMDTVVDLLDVLKKMLKRVDALPTDAALNCVLTAFQTLEGPGREMQIDQKEYLLPLYNQLPRLVANDSCRDVG--------LALRCLSAAFLRRREYSDVRVAAFVRRLSSVALHAPPESSAPILAFVRQLLHRYPGISRLLENEQDVVASGRYLPESNDPERCNAFAGSAWELSL 230
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A448ZJX8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJX8_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.970e-42 Identity = 98/220 (44.55%), Postives = 137/220 (62.27%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA--LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
V+LTYFRVLK L P +EGLAKF HLVN+DTV DLLD+LK+LL + LPLEA+L CVL AF+ L+GPGRE+Q D+ ++ LY +L +G K ++L CL AA KRRE S RVAA +K++ + A + + L+ A +++ RYP+ QLLE+E D +G ++PD+ +PEH+N S++AWEL+ L+ P V
Sbjct: 349 VILTYFRVLKSTDSKTRHDLLPAALEGLAKFSHLVNIDTVVDLLDVLKELLLIVDNLPLEASLNCVLTAFQTLEGPGREMQIDQKEYIAPLYSQLAR-----VGTEENSKKNTYILL--RCLTAAFIKRREYSIVRVAAFVKQMFTVAMHSPDYTSVPLIALARQILQRYPSVHQLLESESDVITSGTYKPDVADPEHSNPFSTSAWELACLKFHVHPQV 561
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: B7FS96_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS96_PHATC) HSP 1 Score: 161 bits (407), Expect = 3.860e-42 Identity = 99/215 (46.05%), Postives = 134/215 (62.33%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA----LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKE-LPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLR 633
V LTYFR+LK A L P +EGLAKF HL+N+DTV DLL +LKDLL LPLEAAL C+L AF+ LQGPG+E+ D ++ LY +LP L +GD R+ V+L CL+AA KRRE ST RV+A K++L+ + A L+ +L+ RYP Q+LENE D +G + PD+ +PEH+N L+++AWEL+L +
Sbjct: 378 VTLTYFRILKHDNLQAAHVETLLPAALEGLAKFAHLINIDTVMDLLGVLKDLLKKMNALPLEAALNCILTAFQTLQGPGKEMNIDVKEYIVPLYTQLPRL----VGDVNCRRHLPTVLL---CLNAAFIKRREYSTIRVSAFWKQILTVSLHVPPHTAVPLIAFGRQLLQRYPVTHQMLENEQDVITSGEYTPDVEDPEHSNPLATSAWELALAK 585
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2PRS0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRS0_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.610e-41 Identity = 101/221 (45.70%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 4 VMLTYFRVLKRRPPPPA---LFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLL-THKELPLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLRHSSEPAV 654
+ LTYFR+LK L PV +EGLAKF HL+N+DTVEDLL+ LK LL T ELPL+A+L C+L +F LQGPGREL+ D+ +V LY +L R T + T LV CL+ A KRRE S RVAA IK+LL+ A A + ++ A L RY QLLENELD +G + P +P+++N ++AAWELS L+ +P V
Sbjct: 142 ITLTYFRILKSHGAGKNALHLLPVALEGLAKFSHLINIDTVEDLLEHLKGLLATVDELPLDASLNCILTSFSTLQGPGRELKIDQKEYVAPLYSQLS----RICSSSTIQHTN----LVLRCLNLAFLKRREFSNTRVAAFIKKLLTVAVHAPPYCSASMIAFARLLFHRYQGTHQLLENELDVVSSGKYSPFTEDPDYSNPFAAAAWELSALKFHIQPVV 354
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Match: A0A7S2YSV4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSV4_9STRA) HSP 1 Score: 155 bits (391), Expect = 4.880e-41 Identity = 94/213 (44.13%), Postives = 136/213 (63.85%), Query Frame = 1
Query: 4 VMLTYFRVLK--RRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHKEL-PLEAALYCVLAAFRALQGPGRELQTDEAAFVGALYRRLPDLLRRDIGDPTGRKTTACVVLVNDCLDAALGKRRELSTARVAAMIKRLLSSANPAWGAGAGGLLRGAHRLILRYPAAQQLLENELDRPGAGPFRPDIPNPEHANALSSAAWELSLLR 633
V LTYFR+LK + PV + GLAKF HL+N+DTV+DLL +LKDLL + +L PL+AAL C+L AF+ LQGPG+EL+ D+ +V LY ++ + ++ K T ++ CL AA K++E S RVAA +K++LS+A + A LL +++ RYP+AQQLLENE D +G + PD+ +PE +N +++ WELS LR
Sbjct: 149 VTLTYFRILKSDNLQAMEDVLPVALAGLAKFAHLINIDTVKDLLAVLKDLLKNVDLLPLDAALNCILTAFQTLQGPGQELKIDQKEYVVPLYSQIARITTKE----NSLKHTEILL---KCLSAAFLKQKEFSNVRVAAFVKQILSAAIHSPSYTAVPLLAFVRQMMQRYPSAQQLLENENDVITSGEYTPDVIDPEQSNPFATSGWELSTLR 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107115.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107115.587.1 >prot_H-elongata_contig107115.587.1 ID=prot_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp MLTYFRVLKRRPPPPALFPVVMEGLAKFVHLVNLDTVEDLLDLLKDLLTHback to top mRNA from alignment at H-elongata_contig107115:169..1429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107115.587.1 ID=mRNA_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1261bp|location=Sequence derived from alignment at H-elongata_contig107115:169..1429+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107115:169..1429+ >mRNA_H-elongata_contig107115.587.1 ID=mRNA_H-elongata_contig107115.587.1|Name=mRNA_H-elongata_contig107115.587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig107115:169..1429+ (Himanthalia elongata Himel1 dioecious)back to top |