mRNA_H-elongata_contig107110.586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107110.586.1
Unique NamemRNA_H-elongata_contig107110.586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107110.586.1 vs. uniprot
Match: A0A2R5GY31_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GY31_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.580e-11
Identity = 56/174 (32.18%), Postives = 78/174 (44.83%), Query Frame = 1 
Query:    1 RVNNRAKELEVIVLWTQHETATQILWARIIRGCEGGDLAKRIVKIQRVKQKSDHLTRFDIYCASKGHQQ--DLLVRLRRHQHKWGWYLCRYIAEKVLDPKSRQDSRRKVIIEDSPAQQKEANPWLRVCTLNVNGVRGKQIDLRYLLENRQIGCLALQETLLRATDWNLNISGYH 516
            RV N A  +  I +W +   +    WAR+        + +RI+K+ +V Q    L RFD+Y  S    +  DLL R  R +  W   L R   E+                + + A    A   LR+   N+NG+R K+ DL  LL+       ALQETLLRATDW    S Y+
Sbjct:  128 RVLNGAAGVSQICVWGETSPSMACFWARLEYCVPNAQVRRRILKVNKVLQAEREL-RFDVYVVSTEAARILDLLRRNGRRRFDWHTRLHRPYHEREHPG------------DAAAAPAAGALKDLRLLAWNINGLRRKREDLASLLQTTVPHVAALQETLLRATDWRTRASKYN 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107110.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2R5GY31_9STRA7.580e-1132.18Uncharacterized protein (Fragment) n=1 Tax=Hondaea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107110contigH-elongata_contig107110:858..1373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.6375692-CDS-H-elongata_contig107110:857..13731622929601.6375692-CDS-H-elongata_contig107110:857..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107110 858..1373 +
1691679086.9495878-CDS-H-elongata_contig107110:857..13731691679086.9495878-CDS-H-elongata_contig107110:857..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107110 858..1373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107110.586.1prot_H-elongata_contig107110.586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107110 858..1373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107110.586.1

>prot_H-elongata_contig107110.586.1 ID=prot_H-elongata_contig107110.586.1|Name=mRNA_H-elongata_contig107110.586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
RVNNRAKELEVIVLWTQHETATQILWARIIRGCEGGDLAKRIVKIQRVKQ
KSDHLTRFDIYCASKGHQQDLLVRLRRHQHKWGWYLCRYIAEKVLDPKSR
QDSRRKVIIEDSPAQQKEANPWLRVCTLNVNGVRGKQIDLRYLLENRQIG
CLALQETLLRATDWNLNISGYH
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mRNA from alignment at H-elongata_contig107110:858..1373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107110.586.1 ID=mRNA_H-elongata_contig107110.586.1|Name=mRNA_H-elongata_contig107110.586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig107110:858..1373+ (Himanthalia elongata Himel1 dioecious)
AGAGTAAATAATAGGGCGAAGGAACTTGAAGTGATTGTGCTTTGGACCCA
GCATGAGACAGCTACACAGATCCTCTGGGCACGTATAATACGAGGATGTG
AGGGAGGAGACCTCGCAAAGCGCATTGTGAAGATACAACGTGTGAAACAA
AAGTCCGATCACCTGACAAGATTCGACATATACTGCGCATCGAAGGGTCA
TCAACAAGATCTCTTGGTGAGGCTGAGGAGACACCAACACAAGTGGGGGT
GGTATCTTTGCCGTTACATCGCGGAAAAAGTTCTCGACCCGAAATCACGT
CAAGACTCCAGGAGAAAGGTTATAATTGAGGATTCACCGGCGCAACAGAA
AGAGGCAAACCCTTGGTTGAGGGTGTGTACTCTGAATGTCAATGGAGTGC
GAGGCAAGCAAATAGACCTGCGATACCTATTGGAAAACAGGCAGATCGGT
TGTCTCGCACTGCAGGAAACATTACTGCGTGCAACGGATTGGAACCTCAA
CATTTCCGGCTATCAT
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Coding sequence (CDS) from alignment at H-elongata_contig107110:858..1373+

>mRNA_H-elongata_contig107110.586.1 ID=mRNA_H-elongata_contig107110.586.1|Name=mRNA_H-elongata_contig107110.586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig107110:858..1373+ (Himanthalia elongata Himel1 dioecious)
AGAGTAAATAATAGGGCGAAGGAACTTGAAGTGATTGTGCTTTGGACCCA
GCATGAGACAGCTACACAGATCCTCTGGGCACGTATAATACGAGGATGTG
AGGGAGGAGACCTCGCAAAGCGCATTGTGAAGATACAACGTGTGAAACAA
AAGTCCGATCACCTGACAAGATTCGACATATACTGCGCATCGAAGGGTCA
TCAACAAGATCTCTTGGTGAGGCTGAGGAGACACCAACACAAGTGGGGGT
GGTATCTTTGCCGTTACATCGCGGAAAAAGTTCTCGACCCGAAATCACGT
CAAGACTCCAGGAGAAAGGTTATAATTGAGGATTCACCGGCGCAACAGAA
AGAGGCAAACCCTTGGTTGAGGGTGTGTACTCTGAATGTCAATGGAGTGC
GAGGCAAGCAAATAGACCTGCGATACCTATTGGAAAACAGGCAGATCGGT
TGTCTCGCACTGCAGGAAACATTACTGCGTGCAACGGATTGGAACCTCAA
CATTTCCGGCTATCATAGAGTAAATAATAGGGCGAAGGAACTTGAAGTGA
TTGTGCTTTGGACCCAGCATGAGACAGCTACACAGATCCTCTGGGCACGT
ATAATACGAGGATGTGAGGGAGGAGACCTCGCAAAGCGCATTGTGAAGAT
ACAACGTGTGAAACAAAAGTCCGATCACCTGACAAGATTCGACATATACT
GCGCATCGAAGGGTCATCAACAAGATCTCTTGGTGAGGCTGAGGAGACAC
CAACACAAGTGGGGGTGGTATCTTTGCCGTTACATCGCGGAAAAAGTTCT
CGACCCGAAATCACGTCAAGACTCCAGGAGAAAGGTTATAATTGAGGATT
CACCGGCGCAACAGAAAGAGGCAAACCCTTGGTTGAGGGTGTGTACTCTG
AATGTCAATGGAGTGCGAGGCAAGCAAATAGACCTGCGATACCTATTGGA
AAACAGGCAGATCGGTTGTCTCGCACTGCAGGAAACATTACTGCGTGCAA
CGGATTGGAACCTCAACATTTCCGGCTATCAT
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