mRNA_H-elongata_contig20519.5851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20519.5851.1
Unique NamemRNA_H-elongata_contig20519.5851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20519.5851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20519contigH-elongata_contig20519:4257..4554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size282
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20519.5851.1prot_H-elongata_contig20519.5851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20519 4275..4491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.998782-UTR-H-elongata_contig20519:4256..42741622930149.998782-UTR-H-elongata_contig20519:4256..4274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20519 4257..4274 +
1691679300.0877264-UTR-H-elongata_contig20519:4256..42741691679300.0877264-UTR-H-elongata_contig20519:4256..4274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20519 4257..4274 +
1622930150.0541139-UTR-H-elongata_contig20519:4491..45541622930150.0541139-UTR-H-elongata_contig20519:4491..4554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20519 4492..4554 +
1691679300.1140182-UTR-H-elongata_contig20519:4491..45541691679300.1140182-UTR-H-elongata_contig20519:4491..4554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20519 4492..4554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930150.0119617-CDS-H-elongata_contig20519:4274..44081622930150.0119617-CDS-H-elongata_contig20519:4274..4408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20519 4275..4408 +
1691679300.0967555-CDS-H-elongata_contig20519:4274..44081691679300.0967555-CDS-H-elongata_contig20519:4274..4408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20519 4275..4408 +
1622930150.0276852-CDS-H-elongata_contig20519:4424..44911622930150.0276852-CDS-H-elongata_contig20519:4424..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20519 4425..4491 +
1691679300.10575-CDS-H-elongata_contig20519:4424..44911691679300.10575-CDS-H-elongata_contig20519:4424..4491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20519 4425..4491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20519.5851.1

>prot_H-elongata_contig20519.5851.1 ID=prot_H-elongata_contig20519.5851.1|Name=mRNA_H-elongata_contig20519.5851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSLHSSCVIVHIVTLLIQNSSAASAFARISSYCSCPQQSGDLLLAARRSR
VLLAGHLSCKPFFVAL*
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mRNA from alignment at H-elongata_contig20519:4257..4554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20519.5851.1 ID=mRNA_H-elongata_contig20519.5851.1|Name=mRNA_H-elongata_contig20519.5851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=298bp|location=Sequence derived from alignment at H-elongata_contig20519:4257..4554+ (Himanthalia elongata Himel1 dioecious)
GTCACAGTTATAGTGGTGATGTCGTTACATTCCTCGTGTGTCATAGTCCA
CATAGTAACTCTTCTCATACAAAACTCGTCTGCTGCAAGTGCTTTCGCCC
GGATTTCATCTTACTGCTCTTGCCCACAGCAGTCGGGCGATTTGTTATTG
GCGCATAATTGGCTTGAGCGCGCGGCGTTCGCGTGTCCTTCTAGCAGGCC
ACCTGTCATGTAAACCATTTTTCGTTGCCCTTTGACTCACGAAACTCTTC
TGGTTTGATAGCTTCCAACCCCCCCCGGTGTTTCCTTTTACTCAAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig20519:4257..4554+

>mRNA_H-elongata_contig20519.5851.1 ID=mRNA_H-elongata_contig20519.5851.1|Name=mRNA_H-elongata_contig20519.5851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig20519:4257..4554+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTACATTCCTCGTGTGTCATAGTCCACATAGTAACTCTTCTCAT
ACAAAACTCGTCTGCTGCAAGTGCTTTCGCCCGGATTTCATCTTACTGCT
CTTGCCCACAGCAGTCGGGCGATTTGTTATTGGCATGTCGTTACATTCCT
CGTGTGTCATAGTCCACATAGTAACTCTTCTCATACAAAACTCGTCTGCT
GCAAGTGCTTTCGCCCGGATTTCATCTTACTGCTCTTGCCCACAGCAGTC
GGGCGATTTGTTATTGGCCGCGCGGCGTTCGCGTGTCCTTCTAGCAGGCC
ACCTGTCATGTAAACCATTTTTCGTTGCCCTTTGACGCGCGGCGTTCGCG
TGTCCTTCTAGCAGGCCACCTGTCATGTAAACCATTTTTCGTTGCCCTTT
GA
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