mRNA_H-elongata_contig107100.585.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107100.585.1
Unique NamemRNA_H-elongata_contig107100.585.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107100.585.1 vs. uniprot
Match: D7G4K8_ECTSI (Leucine zipper transcription factor-like protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.830e-29
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   58 DHSDGRRLSESMYSQEDVEGIMDGLRDCVLTNLRQEVGGVANMSALLMKQMLEDAEHQGATLTFDTSTVEDQ 273
            D  +  RLSE MYSQ+DVE I+DGLR CV+TNLRQEVG VANMSALLMKQMLEDAE Q A+L FDTSTVEDQ
Sbjct:    6 DDINNDRLSEDMYSQQDVESILDGLRGCVITNLRQEVGAVANMSALLMKQMLEDAEQQAASLAFDTSTVEDQ 77
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BLAST of mRNA_H-elongata_contig107100.585.1 vs. uniprot
Match: A0A5D6Y1F7_9STRA (Leucine zipper transcription factor-like protein 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1F7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.940e-6
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    7 FRSFPITVLINSPLL*RDHSDGRRLSESMYSQEDVEGIMDGLRDCVLTNLRQEVGGVANMSALLMKQMLEDAEHQGATLTFDTSTVEDQ 273
            FRS   T L N      D    R  S+ +YSQ+D++ ++  L   V  N+R E+    NM ALL++Q+  +AE +   L  D  ++ED+
Sbjct:  363 FRSRLKTHLENVEADFEDTRSDRLSSDEVYSQKDIQEVLQSLCFAVKANVRSELQDTINMMALLLRQIFSEAEARKLALELDIGSIEDR 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107100.585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4K8_ECTSI7.830e-2977.78Leucine zipper transcription factor-like protein 1... [more]
A0A5D6Y1F7_9STRA5.940e-633.71Leucine zipper transcription factor-like protein 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107100contigH-elongata_contig107100:813..1782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107100.585.1prot_H-elongata_contig107100.585.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107100 903..1782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.5653284-UTR-H-elongata_contig107100:812..9021622929601.5653284-UTR-H-elongata_contig107100:812..902Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107100 813..902 +
1691679086.9221122-UTR-H-elongata_contig107100:812..9021691679086.9221122-UTR-H-elongata_contig107100:812..902Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107100 813..902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.582967-CDS-H-elongata_contig107100:902..9771622929601.582967-CDS-H-elongata_contig107100:902..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107100 903..977 +
1691679086.9319215-CDS-H-elongata_contig107100:902..9771691679086.9319215-CDS-H-elongata_contig107100:902..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107100 903..977 +
1622929601.5973294-CDS-H-elongata_contig107100:1674..17821622929601.5973294-CDS-H-elongata_contig107100:1674..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107100 1675..1782 +
1691679086.9407332-CDS-H-elongata_contig107100:1674..17821691679086.9407332-CDS-H-elongata_contig107100:1674..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107100 1675..1782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107100.585.1

>prot_H-elongata_contig107100.585.1 ID=prot_H-elongata_contig107100.585.1|Name=mRNA_H-elongata_contig107100.585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MYSQEDVEGIMDGLRDCVLTNLRQEVGGVANMSALLMKQMLEDAEHQGAT
LTFDTSTVEDQ
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mRNA from alignment at H-elongata_contig107100:813..1782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107100.585.1 ID=mRNA_H-elongata_contig107100.585.1|Name=mRNA_H-elongata_contig107100.585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig107100:813..1782+ (Himanthalia elongata Himel1 dioecious)
GTTACCTTCCGCTCGTTCCCAATTACTGTACTTATTAATTCTCCGCTACT
CTGACGCGATCACTCCGACGGGAGAAGGTTATCGGAAAGCATGTACAGCC
AAGAAGATGTCGAGGGTATAATGGACGGCCTGAGAGACTGCGTCTTAACC
AACCTAAGGCAGGAGGTGAGGTGCTAAGAGGGAGGGGGGCGGGGGGACGG
TGTGGAAGGTTGGAGAGGAAGAGCTAGCGAGCTATAATATCGTCCGCGGA
GGTCGTGTACGAAGGGTGTCGGAACGGGACGCGGGCGACAGCGGCGATTG
TAGGGTTTACGGACTTATGGACTTATGGACTTATGGACTTATGGACTTAT
GGACTCTTGGTAATTAAGATGGGTGAGATGGGGAGGGGGGGCTCCAAACC
GAGCTATGATCTAGGGCTGTTTGTGTTTAGTATGTAATCACCACAACTCC
TCCTCACTATAATTATTACTATGAAATAGTAAGGAGTGGTTAAGCTGATT
GGTATGCAACGCTCCTCTCAGACAGGAGAAGAAAAACGTGGGCATATAAG
GTCACCGGGAATCAAACCCCGGCCTTCGCTTTTTGTATGGACAACAACAC
ACATCGCTTTTAGTAAGGGGGGGGGGTATTTGTAGTTTCGTTGTTTCAGA
GCTCAGTTCAAAATATCACTTCAAATATCGCTTCGCCCGGGGCCATTAAT
TCGGCCGAACAGCGATTGCCGTCACGCTCTGTCTCAGATGCATAACTGTA
GGAGTGCTGGAAAAAGGAGTACGGTGTGCACAAGTACATCCGCAAGTGAC
GCGGCGGGGCCGAGTGCCCAGTTAATATAAAACTGTGAACAACGTTAAAC
TACGAACAATAGGTGGGAGGGGTGGCGAACATGTCAGCCCTTTTGATGAA
GCAGATGCTAGAAGACGCCGAACACCAGGGGGCAACGCTAACGTTCGACA
CCAGCACTGTTGAGGACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig107100:813..1782+

>mRNA_H-elongata_contig107100.585.1 ID=mRNA_H-elongata_contig107100.585.1|Name=mRNA_H-elongata_contig107100.585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig107100:813..1782+ (Himanthalia elongata Himel1 dioecious)
ATGTACAGCCAAGAAGATGTCGAGGGTATAATGGACGGCCTGAGAGACTG
CGTCTTAACCAACCTAAGGCAGGAGATGTACAGCCAAGAAGATGTCGAGG
GTATAATGGACGGCCTGAGAGACTGCGTCTTAACCAACCTAAGGCAGGAG
GTGGGAGGGGTGGCGAACATGTCAGCCCTTTTGATGAAGCAGATGCTAGA
AGACGCCGAACACCAGGGGGCAACGCTAACGTTCGACACCAGCACTGTTG
AGGACCAGGTGGGAGGGGTGGCGAACATGTCAGCCCTTTTGATGAAGCAG
ATGCTAGAAGACGCCGAACACCAGGGGGCAACGCTAACGTTCGACACCAG
CACTGTTGAGGACCAG
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