mRNA_H-elongata_contig1071.584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1071.584.1
Unique NamemRNA_H-elongata_contig1071.584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1071.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1071contigH-elongata_contig1071:4568..5053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-08_003570.1
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929601.2428613-CDS-H-elongata_contig1071:4567..50531622929601.2428613-CDS-H-elongata_contig1071:4567..5053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1071 4568..5053 +
1691679086.9036276-CDS-H-elongata_contig1071:4567..50531691679086.9036276-CDS-H-elongata_contig1071:4567..5053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1071 4568..5053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1071.584.1prot_H-elongata_contig1071.584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1071 4568..5053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1071.584.1

>prot_H-elongata_contig1071.584.1 ID=prot_H-elongata_contig1071.584.1|Name=mRNA_H-elongata_contig1071.584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
GVKWPAKLRHLTFGCFFNETLRKTHLPSGLQVLELGCGWNQSLTDTTLPN
ELTYLFLGRDFDQALDGVTWPSKLRVLNLGDSFDKPLDGVRWPATLEIID
IGDTFNQCLTDIVWPAGLLHLSIGDMFCHTLEGVVWPKRLKFLSFGVGTD
VREVKGANWPDG
back to top

mRNA from alignment at H-elongata_contig1071:4568..5053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1071.584.1 ID=mRNA_H-elongata_contig1071.584.1|Name=mRNA_H-elongata_contig1071.584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig1071:4568..5053+ (Himanthalia elongata Himel1 dioecious)
GGTGTGAAGTGGCCTGCCAAACTCCGGCACCTTACGTTTGGCTGCTTCTT
CAACGAGACCCTGAGAAAGACACATCTACCTAGCGGACTCCAGGTGCTGG
AGTTGGGCTGCGGCTGGAACCAATCACTGACAGACACGACATTACCGAAC
GAGTTGACATATCTTTTCCTCGGTAGGGACTTTGACCAAGCACTCGATGG
TGTTACTTGGCCTTCGAAGCTCCGAGTTCTGAACCTGGGAGATTCGTTTG
ATAAACCGTTAGACGGAGTGCGATGGCCGGCTACGCTGGAGATAATCGAT
ATTGGAGATACTTTCAATCAATGTCTAACGGATATTGTGTGGCCCGCGGG
GCTTCTGCATCTCTCGATTGGCGACATGTTCTGCCACACCCTGGAGGGTG
TGGTATGGCCGAAGAGGCTGAAGTTTTTGTCATTCGGAGTAGGAACGGAT
GTTCGCGAGGTCAAGGGTGCGAATTGGCCGGATGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1071:4568..5053+

>mRNA_H-elongata_contig1071.584.1 ID=mRNA_H-elongata_contig1071.584.1|Name=mRNA_H-elongata_contig1071.584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig1071:4568..5053+ (Himanthalia elongata Himel1 dioecious)
GGTGTGAAGTGGCCTGCCAAACTCCGGCACCTTACGTTTGGCTGCTTCTT
CAACGAGACCCTGAGAAAGACACATCTACCTAGCGGACTCCAGGTGCTGG
AGTTGGGCTGCGGCTGGAACCAATCACTGACAGACACGACATTACCGAAC
GAGTTGACATATCTTTTCCTCGGTAGGGACTTTGACCAAGCACTCGATGG
TGTTACTTGGCCTTCGAAGCTCCGAGTTCTGAACCTGGGAGATTCGTTTG
ATAAACCGTTAGACGGAGTGCGATGGCCGGCTACGCTGGAGATAATCGAT
ATTGGAGATACTTTCAATCAATGTCTAACGGATATTGTGTGGCCCGCGGG
GCTTCTGCATCTCTCGATTGGCGACATGTTCTGCCACACCCTGGAGGGTG
TGGTATGGCCGAAGAGGCTGAAGTTTTTGTCATTCGGAGTAGGAACGGAT
GTTCGCGAGGTCAAGGGTGCGAATTGGCCGGATGGCGGTGTGAAGTGGCC
TGCCAAACTCCGGCACCTTACGTTTGGCTGCTTCTTCAACGAGACCCTGA
GAAAGACACATCTACCTAGCGGACTCCAGGTGCTGGAGTTGGGCTGCGGC
TGGAACCAATCACTGACAGACACGACATTACCGAACGAGTTGACATATCT
TTTCCTCGGTAGGGACTTTGACCAAGCACTCGATGGTGTTACTTGGCCTT
CGAAGCTCCGAGTTCTGAACCTGGGAGATTCGTTTGATAAACCGTTAGAC
GGAGTGCGATGGCCGGCTACGCTGGAGATAATCGATATTGGAGATACTTT
CAATCAATGTCTAACGGATATTGTGTGGCCCGCGGGGCTTCTGCATCTCT
CGATTGGCGACATGTTCTGCCACACCCTGGAGGGTGTGGTATGGCCGAAG
AGGCTGAAGTTTTTGTCATTCGGAGTAGGAACGGATGTTCGCGAGGTCAA
GGGTGCGAATTGGCCGGATGGC
back to top