mRNA_H-elongata_contig20492.5838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20492.5838.1
Unique NamemRNA_H-elongata_contig20492.5838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 5.120e-63
Identity = 126/249 (50.60%), Postives = 149/249 (59.84%), Query Frame = 1 
Query:   13 DSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGMQPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKGLAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSVTGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSHTADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQFPSP 759
            D L +  L  PFAWAEMAR AL LHALREVGRD+KDLQPL+LGGG+ P NNKDPKAMLTEADRK           TVKL+RMRLE R+E AA  KG +   + AA   A +HTCPY+SAGAL  RVY+PG+AWC RGDWRFHLLSVT  DPYT  +K AI+ NLRAAV ++  A          G    E+ +    A    N         S                + + TLK IL+  P++FP P
Sbjct:  279 DPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRK-----------TVKLVRMRLEQRFEAAAARKGTSGPATPAAANVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDPYTPQDKTAIVRNLRAAVRLLDAATE--------GAPPNERMKDQRGASATKNQQK------SHXXXXXXXXXXXXXESRHYFTLKAILDRSPERFPPP 502
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BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Match: D7G219_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G219_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 1.510e-61
Identity = 125/249 (50.20%), Postives = 150/249 (60.24%), Query Frame = 1 
Query:   13 DSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGMQPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKGLAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSVTGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSHTADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQFPSP 759
            D L +  L  PFAWAEMAR AL LHALREVGRD+KDLQPL+LGGG+ P NNKDPKAMLTEADRK           TVKL+RMRL+ R+E AA  +G +   + AA   A +HTCPY+SAGAL  RVY+PG+AWC RGDWRFHLLSVT  DPYT  +KAAI+ NLRAAV ++  A          G    EK +    A                      E+       + + TLK IL+  P++FP P
Sbjct:  312 DPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRK-----------TVKLIRMRLDQRFEAAAARQGTSGPATPAAANVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDPYTPQDKAAIVRNLRAAVRLLDAATE--------GALPNEKMKDQGGASASXXXXXXXXXXXXXXXXXXXES-------RHYFTLKAILDRSPERFPPP 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE5.120e-6350.60Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G219_ECTSI1.510e-6150.20Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20492contigH-elongata_contig20492:3936..6532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBromodomain and FY-rich domain protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-20_002790.1
Exons4
Model size774
Cds size774
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20492.5838.1prot_H-elongata_contig20492.5838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20492 3936..6532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.7634-CDS-H-elongata_contig20492:3935..41721622930148.7634-CDS-H-elongata_contig20492:3935..4172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 3936..4172 +
1691679299.6244345-CDS-H-elongata_contig20492:3935..41721691679299.6244345-CDS-H-elongata_contig20492:3935..4172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 3936..4172 +
1622930148.780873-CDS-H-elongata_contig20492:4845..49231622930148.780873-CDS-H-elongata_contig20492:4845..4923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 4846..4923 +
1691679299.6330554-CDS-H-elongata_contig20492:4845..49231691679299.6330554-CDS-H-elongata_contig20492:4845..4923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 4846..4923 +
1622930148.7950869-CDS-H-elongata_contig20492:5681..58361622930148.7950869-CDS-H-elongata_contig20492:5681..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 5682..5836 +
1691679299.6410458-CDS-H-elongata_contig20492:5681..58361691679299.6410458-CDS-H-elongata_contig20492:5681..5836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 5682..5836 +
1622930148.8140361-CDS-H-elongata_contig20492:6228..65321622930148.8140361-CDS-H-elongata_contig20492:6228..6532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 6229..6532 +
1691679299.6486104-CDS-H-elongata_contig20492:6228..65321691679299.6486104-CDS-H-elongata_contig20492:6228..6532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20492 6229..6532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20492.5838.1

>prot_H-elongata_contig20492.5838.1 ID=prot_H-elongata_contig20492.5838.1|Name=mRNA_H-elongata_contig20492.5838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
IPSPDSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGM
QPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKG
LAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSV
TGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSH
TADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQF
PSPTDDG*
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mRNA from alignment at H-elongata_contig20492:3936..6532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20492.5838.1 ID=mRNA_H-elongata_contig20492.5838.1|Name=mRNA_H-elongata_contig20492.5838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2597bp|location=Sequence derived from alignment at H-elongata_contig20492:3936..6532+ (Himanthalia elongata Himel1 dioecious)
ATTCCCTCTCCCGATTCCCTCTCCCTGTTCCCTCTCGTTCAGCCGTTCGC
ATGGGCAGAGATGGCGAGGATGGCTTTGTGTCTGCACGCCTTGAGAGAGG
TGGGTCGGGACGAGAAAGACTTGCAGCCCCTGATATTGGGAGGAGGCATG
CAGCCCGCCAACAACAAGGATCCTAAGGCCATGCTTACGGAGGCCGACAG
GAAGGCGAGCGCTGCTATTTATTTTAAGAGTAATATCGTCACGGGAAGGG
TCTAAAGTGAATAGATAATACCCTCAAGTAGTATGCTCGCGGAGGGCCTG
GAGGAAAAATAGTCTAATTTATATACTTTATTCAAGTATAAAGTGTGTTT
GCGGGGACAGACAAAAAATATAGTTTAATGCACACTGTATTCAAGTAGTA
TACTGACCGGGGTAGACTAATATTAGAAGCAGCTTATAAAGTTATAACTG
TAGCAAAGAACTATGCTCGCGGAGGCCGATATTTTATTTTTTTGGATGAA
GACTGTATCTAAAGTATAGTGTTAGTACATAGTATACTACACCCTCATGT
ACCGTCATTCTCCAAAGATGACCAGAAAGTATGTCCCTCCCCCCTCAGGT
GGGGTACGCCGCCCCACATACTCATGTCGGAAAAATAAAAAAGGGTCCAA
GGCTTTCATATTTAAAACCCCGGGGATCTTGGTCTTTGATCCCCGGGGTG
TGGTGGTTATACCGGAAGGGGGGGTAGTAGCTTCGATTCAAAAGTTTTTA
AAAATAATTTTGGAAGTCAATATGTGGATGAAGTCATTGTTTTATCCCGC
CTGAAATTGGCAATTTCCTCATTACGTCCTCATTTCGTCATCGTGACGTC
ATCACCATATCCCGCTATCCCCTCTTACCCATCGGCGCACCACGTCAAAC
GCCACGCAAGACCGTAAAACTCCTGCGGATGAGATTGGAACACCGCTGGG
AGGTGGCGGCTACAAGCAAGGGACTGGCAGCGTCCCAGGTGAGGCACGAG
ACAAGATTAAAATGCTAAAATGCTCAAGTGCGTAATCCTAATCCTGACCC
TGACCCTAATTTCGCTTAAGTGAAGACGAAGAGAAAAGTCGCCCCGTCCG
GCACGCCTAAATATTATGCTTCGTATTTGATTGTAATGGGATACGGTCTA
AAATCAATTTGTAAATCATAGATCCCTTTCCCCGGCGGCGACACGTTGAT
GATAAAAAGTCTTCGCAAGTCAGTAGGAAACCCGAACGCGGGTCCGTGTC
GCCCACCGGTACCCCCTCCGTTCACCTCGTTTGTTTGTTTTTGTTGTTGT
TTCTTTTTGAAGAAAAACCGCTCTTTTTTATTGATGTTTTAAATAAGTAC
AATTATTTTTGATCGATGGCGTTTCGGTAAAAGTTTGAACGTTTTTAGTA
GGTCGCTATTTGGATCGGGTATTGAATCTCCTCTTTCTACAAGTATATTT
AGTGTTGGTAGTTTGTAGGCGTTTTAGACAAAATGACACAATGGTAGAAG
CGACACCCCTCTCAAGAAAATGTCATCGTGCTTCTGAAGTTGCCTCCCCC
CACCGCCCGTCTTTGCTGCTTTTGATTGACGTTTGATTGGCTGCTACGAC
GGGGGTGCTTACTTCCCCTTCGCCTTGCCTCGGTGACACCTTGGCCTAGT
CCAACCCTATCTTAAAATATAGGACTATCCCTGACCTACCCCCTCTAACC
CTAACCCTAACCCTAACCCTAACCCTAAATCCTTGTTCCCCTGAAGTCCA
CGGCAGCGGTCATGGCTGCCTGTATCCACACGTGTCCGTACACCAGCGCT
GGGGCTTTGATGGCGAGGGTTTACTCTCCCGGGGAGGCGTGGTGCGGGCG
GGGAGACTGGAGGTTTCACTTGCTCAGCGTCACGGGGTGGGACCCTTACA
CGTAAGTGAAACCTAGTATATGAATAGTCTAGCTGTCTGAAGGTTTAATA
GGAATATATACCTCCTTATAACTATTATACATTAACTATTATACATTAAT
CATTACAACGGAGAGGACAGTGTCAGTCTTATGCACATGGTGCTAAAAAC
TAAAGGACGCCATGGACTTCATGTCAGCCTTCTTTTAAAGAAAATCTTAA
CTATTAATAGTATTAATACATGTATAGTATGTACGGTATATTTTAAGGTG
ATATTATAATGCTCCGGCTGTGGTCTAAACGACACCTTCTGTAGTGTTGT
GTAGTAAAAGTCCCTTTCCCCTCTCCCCTTGGCCAAAATACCGCCATCTT
TCCGTATGCACTGGAAACCCTTTCGGTGGCGGCAAACTCGCAGGCGGCAT
AACAAGGCGGCCATCTTGGCGAACCTCAGGGCTGCGGTGGAAATGATATC
GATCGCCGCCTCGATCACCGACACCCCCGACGGGTCGGGGCTAGGATCGG
GAGAAAAGAGAAGACGTAGCCATACGGCCGATCGAAAGATGAACACGCAC
TCCAAGTTAGTGCTGGCCCTGAGCAGGGACGGAATAAAGGCCAGAGAGGC
TGCCGTGGAGGTGTCCTCGATGAAGCAGTTCGGCACTCTCAAGACCATCT
TGGAGAACCATCCTGACCAGTTCCCGTCGCCTACTGACGATGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20492:3936..6532+

>mRNA_H-elongata_contig20492.5838.1 ID=mRNA_H-elongata_contig20492.5838.1|Name=mRNA_H-elongata_contig20492.5838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig20492:3936..6532+ (Himanthalia elongata Himel1 dioecious)
ATTCCCTCTCCCGATTCCCTCTCCCTGTTCCCTCTCGTTCAGCCGTTCGC
ATGGGCAGAGATGGCGAGGATGGCTTTGTGTCTGCACGCCTTGAGAGAGG
TGGGTCGGGACGAGAAAGACTTGCAGCCCCTGATATTGGGAGGAGGCATG
CAGCCCGCCAACAACAAGGATCCTAAGGCCATGCTTACGGAGGCCGACAG
GAAGGCGAGCGCTGCTATTTATTTTAAGAGTAATATCATTCCCTCTCCCG
ATTCCCTCTCCCTGTTCCCTCTCGTTCAGCCGTTCGCATGGGCAGAGATG
GCGAGGATGGCTTTGTGTCTGCACGCCTTGAGAGAGGTGGGTCGGGACGA
GAAAGACTTGCAGCCCCTGATATTGGGAGGAGGCATGCAGCCCGCCAACA
ACAAGGATCCTAAGGCCATGCTTACGGAGGCCGACAGGAAGGCGAGCGCT
GCTATTTATTTTAAGAGTAATATCACCGTAAAACTCCTGCGGATGAGATT
GGAACACCGCTGGGAGGTGGCGGCTACAAGCAAGGGACTGGCAGCGTCCC
AGACCGTAAAACTCCTGCGGATGAGATTGGAACACCGCTGGGAGGTGGCG
GCTACAAGCAAGGGACTGGCAGCGTCCCAGTCCACGGCAGCGGTCATGGC
TGCCTGTATCCACACGTGTCCGTACACCAGCGCTGGGGCTTTGATGGCGA
GGGTTTACTCTCCCGGGGAGGCGTGGTGCGGGCGGGGAGACTGGAGGTTT
CACTTGCTCAGCGTCACGGGGTGGGACCCTTACACTCCACGGCAGCGGTC
ATGGCTGCCTGTATCCACACGTGTCCGTACACCAGCGCTGGGGCTTTGAT
GGCGAGGGTTTACTCTCCCGGGGAGGCGTGGTGCGGGCGGGGAGACTGGA
GGTTTCACTTGCTCAGCGTCACGGGGTGGGACCCTTACACGCGGCATAAC
AAGGCGGCCATCTTGGCGAACCTCAGGGCTGCGGTGGAAATGATATCGAT
CGCCGCCTCGATCACCGACACCCCCGACGGGTCGGGGCTAGGATCGGGAG
AAAAGAGAAGACGTAGCCATACGGCCGATCGAAAGATGAACACGCACTCC
AAGTTAGTGCTGGCCCTGAGCAGGGACGGAATAAAGGCCAGAGAGGCTGC
CGTGGAGGTGTCCTCGATGAAGCAGTTCGGCACTCTCAAGACCATCTTGG
AGAACCATCCTGACCAGTTCCCGTCGCCTACTGACGATGGGTGAGCGGCA
TAACAAGGCGGCCATCTTGGCGAACCTCAGGGCTGCGGTGGAAATGATAT
CGATCGCCGCCTCGATCACCGACACCCCCGACGGGTCGGGGCTAGGATCG
GGAGAAAAGAGAAGACGTAGCCATACGGCCGATCGAAAGATGAACACGCA
CTCCAAGTTAGTGCTGGCCCTGAGCAGGGACGGAATAAAGGCCAGAGAGG
CTGCCGTGGAGGTGTCCTCGATGAAGCAGTTCGGCACTCTCAAGACCATC
TTGGAGAACCATCCTGACCAGTTCCCGTCGCCTACTGACGATGGGTGA
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