mRNA_H-elongata_contig20465.5826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20465.5826.1
Unique NamemRNA_H-elongata_contig20465.5826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20465.5826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20465contigH-elongata_contig20465:2251..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.8523922-CDS-H-elongata_contig20465:2250..24331622930147.8523922-CDS-H-elongata_contig20465:2250..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20465 2251..2433 +
1691679299.2901645-CDS-H-elongata_contig20465:2250..24331691679299.2901645-CDS-H-elongata_contig20465:2250..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20465 2251..2433 +
1622930147.8807049-CDS-H-elongata_contig20465:2951..30291622930147.8807049-CDS-H-elongata_contig20465:2951..3029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20465 2952..3029 +
1691679299.298945-CDS-H-elongata_contig20465:2951..30291691679299.298945-CDS-H-elongata_contig20465:2951..3029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20465 2952..3029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20465.5826.1prot_H-elongata_contig20465.5826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20465 2251..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20465.5826.1

>prot_H-elongata_contig20465.5826.1 ID=prot_H-elongata_contig20465.5826.1|Name=mRNA_H-elongata_contig20465.5826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MEEDKSDLKERQKALKERQKALSERERELREFEDGRKARAADLAALEKGL
ANERANIVRRESEVAQLEEEVHKRYQDAEEKQRTADR
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mRNA from alignment at H-elongata_contig20465:2251..3029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20465.5826.1 ID=mRNA_H-elongata_contig20465.5826.1|Name=mRNA_H-elongata_contig20465.5826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=779bp|location=Sequence derived from alignment at H-elongata_contig20465:2251..3029+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGACAAATCTGACTTGAAGGAGAGGCAGAAGGCCTTGAAGGA
GAGGCAGAAGGCTTTGTCCGAACGGGAGAGAGAGTTGAGGGAGTTCGAGG
ACGGGAGGAAAGCGAGAGCGGCCGACCTAGCGGCGCTCGAGAAGGGACTC
GCGAATGAGAGGGCCAACATCGTGCGAAGAGAGGTGAGAAGGTTTTGCGC
CAACCTCGACGCCGTTGACATCCTGCATCATGAAAACAAAGTGGAAGAAG
ATATTAATAACATCATGCAGTATGCAGTATACTGGATATAGTATACTGGA
TATAGTATACTGAATACAGTATACTGGATATAAATTACAAGCGGACCTGT
GTAGTACTATGTAGTAATAAATAATTCGACGCGGCGTATGGATGTACTAT
ACTATACTATACTATACTAGTATACTATTTACTTGTTGGGTGTGCCGATA
CCGGTGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCC
GATGCCGATGCCGATACCGATGCCGATGCCGATGCCGATGCCGATGCCGA
TGCCGATGCCGATGCCGATGCCGATGTCTAGCCTGTTGATGGGGATGGCG
CACGCACACGCAAACTAAAAGTAATAAATGCACAAACACTAGTACTAATA
TTATTTAATACTAAACTATACTATACTATACTATATACTATACCGTACCA
GTCGGAGGTGGCGCAGTTGGAGGAGGAAGTGCACAAGAGATATCAAGATG
CTGAAGAAAAGCAGAGGACTGCAGACCGG
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Coding sequence (CDS) from alignment at H-elongata_contig20465:2251..3029+

>mRNA_H-elongata_contig20465.5826.1 ID=mRNA_H-elongata_contig20465.5826.1|Name=mRNA_H-elongata_contig20465.5826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig20465:2251..3029+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGACAAATCTGACTTGAAGGAGAGGCAGAAGGCCTTGAAGGA
GAGGCAGAAGGCTTTGTCCGAACGGGAGAGAGAGTTGAGGGAGTTCGAGG
ACGGGAGGAAAGCGAGAGCGGCCGACCTAGCGGCGCTCGAGAAGGGACTC
GCGAATGAGAGGGCCAACATCGTGCGAAGAGAGATGGAAGAAGACAAATC
TGACTTGAAGGAGAGGCAGAAGGCCTTGAAGGAGAGGCAGAAGGCTTTGT
CCGAACGGGAGAGAGAGTTGAGGGAGTTCGAGGACGGGAGGAAAGCGAGA
GCGGCCGACCTAGCGGCGCTCGAGAAGGGACTCGCGAATGAGAGGGCCAA
CATCGTGCGAAGAGAGTCGGAGGTGGCGCAGTTGGAGGAGGAAGTGCACA
AGAGATATCAAGATGCTGAAGAAAAGCAGAGGACTGCAGACCGGTCGGAG
GTGGCGCAGTTGGAGGAGGAAGTGCACAAGAGATATCAAGATGCTGAAGA
AAAGCAGAGGACTGCAGACCGG
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