prot_H-elongata_contig10708.582.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10708.582.1
Unique Nameprot_H-elongata_contig10708.582.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length580
Homology
BLAST of mRNA_H-elongata_contig10708.582.1 vs. uniprot
Match: D8LTG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG0_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.260e-80
Identity = 222/589 (37.69%), Postives = 285/589 (48.39%), Query Frame = 0
Query:    7 SAEGVYVVVGLETGGVEVMRLSSRRPGIRFLDLVDPRRFDETDGDDHRDGDPSTREEVPVEETEGVHLCCGKILAQASAVARGSAAIGTEEEGHHTRGTPSPLLNEQQE---CRPSESGPLLFSGNPGPGSSNYPTRCAWRVPACKAAAVPRALLGEHGWGLVVGLATSAGTVSTVGAPGSVVATPMGTLPLSRTFPGAPRSDRYPATDSVARFGGDIGDEEDEEQAFAVCLSGRCVGFCRVVSTEEGLPRWRVLWTKQTEESLMAFQRLDYANEQGMSGANRESLVVACSYSGNTILFSTDGSHCAELNPGQVLKHPLTAFVAGDWTTSLGATEPSLVYVSAGGEVMVYHGLTEKAESLPSAQFLPTLHEEGSMDVLRGLLENLAERLRWRSNQGDILFPSSPSSTDSPDS------------DSVAPSSATAAGSAAPIALSDDEREDSTLSLPDEILARAVLCPVGI----AMNARGKDRRRXXXXXXXXXXXXXXXXXXDRWQREACALARGKGSTITVGEGATAAERVLREMRAWEERGREPTLRRYPCLRETLAALTLWGSGSRRESLRNALKEAEAKTAICA 576
            SA GVYV VGL+TG VEVMRLSS+R G R LDLV                       +  E ++ +       ++ A+A A    A      G    G  S L ++ ++   C  SE+  L     P P             PA K +      +G     ++ G A +A + +T  A G V +   G                 PA               D   A A    G  VGF                    TEE+L +FQRLD+  E+G      ESL V CS+SGNT +F  +G  CA  +    L  PLTAFVAGD TT  G+T PSLVY+ A G+V+ YHGL E+ ES   AQF+P L ++GSM  L+ LL +LA RL+WRS++  +  P  PSST  PD+            D    S      SAA   +  D+  D+ LSL D IL RAVLC  G+    A  AR  +RR+                   RW+RE  ALA G+GSTI VGEGA A +RVL+EM+AWE RGREPTL+ +PCLR TL AL+ WGSG RR+SLR+ALKE+EA   + A
Sbjct:   68 SAAGVYVAVGLDTGVVEVMRLSSQRMGTRILDLV-----------------------IASERSDRLSS-----ISDAAAAADSHPAADGSAAGDALGGGLSRLSSDDRDAHVCLRSETSAL----QPPPEGE----------PAAKLSGE----VGNQEERVLPGAAAAAASTAT--AAGLVASVLCGW--------------HVPA---------------DSPSADAWAGRGLVVGF------------------SDTEEALHSFQRLDFEREEG----GTESLFVVCSWSGNTFMFDAEGMPCAGFDAEAYLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFMPILVKDGSMGTLKDLLTSLANRLQWRSSEQAL--PLFPSSTPPPDAQPADESECVQFADGTGSSGPAEVASAAAANIFSDDEPDTALSLSDSILTRAVLCSPGLVVALASTARRNERRKSTADSGGCSFDDA------RWRREMRALAEGEGSTIKVGEGAAAIDRVLKEMQAWETRGREPTLKHFPCLRGTLEALSSWGSGPRRDSLRSALKESEATAEVFA 549          
BLAST of mRNA_H-elongata_contig10708.582.1 vs. uniprot
Match: A0A6H5JG01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG01_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.200e-76
Identity = 234/628 (37.26%), Postives = 304/628 (48.41%), Query Frame = 0
Query:    7 SAEGVYVVVGLETGGVEVMRLSSRRPGIRFLDLV-----DPRRFDETDGDDHRDGDPSTREEVPVEETEG-----------VHLCCGKILAQASAVARGSAAIGTEEEGHHTRGTPSPLLNEQQECRPSESGPLLFSGNPGPGSSNYPTR----------CAWRVPACKAAAVPRALLGEHGWGLVVGLATSAGTVSTVGAPGSVVATPMGTLPLSRTFPGAPRSDRYPATDSVARFGGDIGDEEDEEQAFAVCLSGRCVGFCRVVSTEEGLPRWRVLWTKQTEESLMAFQRLDYANEQGMSGANRESLVVACSYSGNTILFSTDGSHCAELNPGQVLKHPLTAFVAGDWTTSLGATEPSLVYVSAGGEVMVYHGLTEKAESLPSAQFLPTLHEEGSMDVLRGLLENLAERLRWRSNQGDI-LFPSSPSSTDSPDSD------------SVAPSSATAAGSAAPIALSDDEREDSTLSLPDEILARAVLCPVGIAM----NARGKDRRRXXXXXXXXXXXXXXXXXXDRWQREACALARGKGSTITVGEGATAAERVLREMRAWEERGR---------------EPTLRRYPCLRETLAALTLWGSGSRRESLRNALKEAEAKTAICA 576
            SA GVYV VGL+TG VEVMRLSS+R G R LDLV       R    +D     D  P+       +   G            H+C     + +   A G  A     E +    T S L  ++ E    E   L     PG  ++   T           C W VPA   +A   A     G GLVVG +                 T  GT P + T    PR+     + +V   G             +  + G   G     S++ G    R       +E+L +FQRLD+ +E+G      ESL V CS+SGNT++F  +G  CA  +    L  PLTAFVAGD TT  G+T PSLVY+ A G+V+ YHGL E+ ES   AQF+P L ++GSMD L+ LL +LA RL+WRS++  + LFPSS    D+  +D            S  P+    A +AA I  SDDE  D+ LSL D IL RAVLC  G+ +     AR  +RR+                   RW+RE  ALA G+GSTITVGEGA A +RVL+EM+AW+ RGR               EPTL  +PCLR TL AL+ WGSG RR+SLR+ALKE++A   + A
Sbjct:  383 SAAGVYVAVGLDTGVVEVMRLSSQRVGTRILDLVIASERSDRLSSISDAAAAADSHPAADGSAAGDTLGGGLSRLSSDDRDAHVCLRSETSASQPAAEGGPAAKLSGESN----TMSRLRLDRDEVGNQEKRVL-----PGAAAAAVATATAAGLVASVLCGWHVPADSPSADSWA-----GRGLVVGFSD----------------TEAGTSPFAET----PRTPLGHTSGNVPTRGWG-----------SKTIEGVGAGAS---SSQTGSGDGR-------QEALHSFQRLDFEHEEG----GTESLFVVCSWSGNTLMFDAEGMPCAGFDAEAHLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFIPILVKDGSMDKLKDLLTSLANRLQWRSSEQALPLFPSSTPPPDAQPADESECVQLEDGTGSSGPAEVATAAAAANI-FSDDE-PDAALSLSDAILTRAVLCSSGLVVALGSTARRNERRKSTADCGACSFDDA------RWRREMRALAEGEGSTITVGEGAAAIDRVLKEMQAWQTRGRGSERPVRPLSPLLPAEPTLTHFPCLRGTLEALSCWGSGPRRDSLRSALKESKATAEVFA 943          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10708.582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTG0_ECTSI2.260e-8037.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG01_9PHAE3.200e-7637.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031793Integrin-alpha FG-GAP repeat-containing protein 2PFAMPF15907Itfg2coord: 256..355
e-value: 7.6E-8
score: 31.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10708contigH-elongata_contig10708:1509..5341 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10708.582.1mRNA_H-elongata_contig10708.582.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10708 600..6333 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10708.582.1 ID=prot_H-elongata_contig10708.582.1|Name=mRNA_H-elongata_contig10708.582.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=580bp
MAGVEDSAEGVYVVVGLETGGVEVMRLSSRRPGIRFLDLVDPRRFDETDG
DDHRDGDPSTREEVPVEETEGVHLCCGKILAQASAVARGSAAIGTEEEGH
HTRGTPSPLLNEQQECRPSESGPLLFSGNPGPGSSNYPTRCAWRVPACKA
AAVPRALLGEHGWGLVVGLATSAGTVSTVGAPGSVVATPMGTLPLSRTFP
GAPRSDRYPATDSVARFGGDIGDEEDEEQAFAVCLSGRCVGFCRVVSTEE
GLPRWRVLWTKQTEESLMAFQRLDYANEQGMSGANRESLVVACSYSGNTI
LFSTDGSHCAELNPGQVLKHPLTAFVAGDWTTSLGATEPSLVYVSAGGEV
MVYHGLTEKAESLPSAQFLPTLHEEGSMDVLRGLLENLAERLRWRSNQGD
ILFPSSPSSTDSPDSDSVAPSSATAAGSAAPIALSDDEREDSTLSLPDEI
LARAVLCPVGIAMNARGKDRRRSGGDGGAESSNGGGIVDDDRWQREACAL
ARGKGSTITVGEGATAAERVLREMRAWEERGREPTLRRYPCLRETLAALT
LWGSGSRRESLRNALKEAEAKTAICALLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031793KICSTOR_ITFG2