prot_H-elongata_contig204581.5822.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 3.400e-17 Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+ELVGTLRGFDDYVNMVLDDVTEYE DADGTKR++QLDQ+
Sbjct: 27 KELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQI 66
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.490e-13 Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+ELVGTLRGFDDYVNMVL+DVTEYE DA+G +R+V+L+Q+
Sbjct: 27 KELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQI 66
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC) HSP 1 Score: 61.2 bits (147), Expect = 4.590e-11 Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E VGTLRGFDDYVNMVLDDVTEYE +G KRKV +DQV
Sbjct: 28 KEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQV 66
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: H3G705_PHYRM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G705_PHYRM) HSP 1 Score: 60.5 bits (145), Expect = 5.390e-11 Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E +GTLRGFDDYVNMVLDDVTEYE +G KR+V+LDQV
Sbjct: 19 KEFIGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 57
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA) HSP 1 Score: 60.8 bits (146), Expect = 8.900e-11 Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E+VGTLRGFDDYVNMVL+DVTEYE ADG KR +LDQ+
Sbjct: 45 KEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQI 83
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A8J5M5U7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M5U7_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.650e-10 Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E +GTLRGFDDYVNMVLDDVTEYE +G KR+V+LDQV
Sbjct: 27 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 65
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: R1CRE5_EMIHU (U6 snRNA-associated Sm-like protein LSm5 (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=R1CRE5_EMIHU) HSP 1 Score: 59.3 bits (142), Expect = 1.970e-10 Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+ELVGTLRGFDDYVNMVLDDVTEYE +G KR +LDQ+
Sbjct: 20 KELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRVTKLDQI 58
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD) HSP 1 Score: 59.3 bits (142), Expect = 2.390e-10 Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E +GTLRGFDDYVNMVLDDVTEYE +G KR+++LDQV
Sbjct: 28 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQV 66
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR) HSP 1 Score: 59.7 bits (143), Expect = 2.840e-10 Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E +GTLRGFDDYVNMVLDDVTEYE +G KR+V+LDQV
Sbjct: 50 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 88
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 3.650e-10 Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
+E VGTLRGFDDYVNMVLDDV EYE +G KRKV++DQV
Sbjct: 29 KEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQV 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig204581.5822.1 ID=prot_H-elongata_contig204581.5822.1|Name=mRNA_H-elongata_contig204581.5822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bpback to top |