mRNA_H-elongata_contig204581.5822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204581.5822.1
Unique NamemRNA_H-elongata_contig204581.5822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-17
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +ELVGTLRGFDDYVNMVLDDVTEYE DADGTKR++QLDQ+
Sbjct:   27 KELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQI 66
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.490e-13
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +ELVGTLRGFDDYVNMVL+DVTEYE DA+G +R+V+L+Q+
Sbjct:   27 KELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQI 66
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 4.590e-11
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E VGTLRGFDDYVNMVLDDVTEYE   +G KRKV +DQV
Sbjct:   28 KEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQV 66
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: H3G705_PHYRM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G705_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 5.390e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   19 KEFIGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 57
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 8.900e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E+VGTLRGFDDYVNMVL+DVTEYE  ADG KR  +LDQ+
Sbjct:   45 KEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQI 83
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A8J5M5U7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M5U7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-10
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   27 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 65
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: R1CRE5_EMIHU (U6 snRNA-associated Sm-like protein LSm5 (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=R1CRE5_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +ELVGTLRGFDDYVNMVLDDVTEYE   +G KR  +LDQ+
Sbjct:   20 KELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRVTKLDQI 58
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 2.390e-10
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+++LDQV
Sbjct:   28 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQV 66
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-10
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   50 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 88
[Close]
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.650e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   28 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 147
            +E VGTLRGFDDYVNMVLDDV EYE   +G KRKV++DQV
Sbjct:   29 KEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQV 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI3.400e-1787.50U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA1.490e-1375.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC4.590e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
H3G705_PHYRM5.390e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A7S4M2I3_9EUKA8.900e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A8J5M5U7_9STRA1.650e-1075.00Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
R1CRE5_EMIHU1.970e-1075.00U6 snRNA-associated Sm-like protein LSm5 (Fragment... [more]
K3W4W8_GLOUD2.390e-1072.50U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
W2LTZ1_PHYPR2.840e-1075.00U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]
A0A024UWN5_9STRA3.650e-1075.00U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204581contigH-elongata_contig204581:277..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LJI3
Preferred nameLSM5
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033993,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsCOG1958@1,KOG1775@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSm-like protein LSm5
Ec32 orthologEc-17_002110.1
Exons1
Model size150
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.5461104-CDS-H-elongata_contig204581:276..4261622930147.5461104-CDS-H-elongata_contig204581:276..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204581 277..426 +
1691679299.1871212-CDS-H-elongata_contig204581:276..4261691679299.1871212-CDS-H-elongata_contig204581:276..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204581 277..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204581.5822.1prot_H-elongata_contig204581.5822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204581 277..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204581.5822.1

>prot_H-elongata_contig204581.5822.1 ID=prot_H-elongata_contig204581.5822.1|Name=mRNA_H-elongata_contig204581.5822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MHRPLSHPIQELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV*
back to top

mRNA from alignment at H-elongata_contig204581:277..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204581.5822.1 ID=mRNA_H-elongata_contig204581.5822.1|Name=mRNA_H-elongata_contig204581.5822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig204581:277..426+ (Himanthalia elongata Himel1 dioecious)
ATGCATCGCCCCCTGTCCCATCCCATACAGGAGCTCGTGGGAACACTGAG
AGGGTTCGACGACTACGTGAACATGGTGCTGGATGACGTGACTGAGTACG
AAGCTGATGCCGATGGTACGAAGAGGAAGGTCCAGCTCGATCAGGTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig204581:277..426+

>mRNA_H-elongata_contig204581.5822.1 ID=mRNA_H-elongata_contig204581.5822.1|Name=mRNA_H-elongata_contig204581.5822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig204581:277..426+ (Himanthalia elongata Himel1 dioecious)
ATGCATCGCCCCCTGTCCCATCCCATACAGGAGCTCGTGGGAACACTGAG
AGGGTTCGACGACTACGTGAACATGGTGCTGGATGACGTGACTGAGTACG
AAGCTGATGCCGATGGTACGAAGAGGAAGGTCCAGCTCGATCAGGTATAA
ATGCATCGCCCCCTGTCCCATCCCATACAGGAGCTCGTGGGAACACTGAG
AGGGTTCGACGACTACGTGAACATGGTGCTGGATGACGTGACTGAGTACG
AAGCTGATGCCGATGGTACGAAGAGGAAGGTCCAGCTCGATCAGGTATAA
back to top