mRNA_H-elongata_contig204097.5809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204097.5809.1
Unique NamemRNA_H-elongata_contig204097.5809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.130e-55
Identity = 97/129 (75.19%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    1 QSTQRANVGKS----RSSTGASQTPRTKR-SSTIYGMKEQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            Q+TQR+++G S    RS T  +  PR KR ++   G KEQ+RAIKDAN+EAHSPKDWTPELT+ LRDLVDELGPKWS IA+K+PGKTATACMLHWRVG+NP+HMVKGSGTWTAEEDERLSKLVEVVGMK
Sbjct:  189 QNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPGKTATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMK 317          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 7.340e-53
Identity = 97/129 (75.19%), Postives = 110/129 (85.27%), Query Frame = 1
Query:    1 QSTQRANVGKS----RSSTGASQTPRTKR-SSTIYGMKEQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            Q+TQ +++G S    RS T  +  PR KR ++   G KEQ+RAIKDAN+EAHSPKDWTPELT+ LRDLVDELGPKWS IA+K+PGKTATACMLHWRVG+NPNHMVKGSGTWTAEEDERLSKLVEVVGMK
Sbjct:  927 QNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPGKTATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 1055          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.870e-16
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  100 EQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPK----WSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEV 360
            E  +A++ A +E + P DW  E T+ L +LV++L       W +IA   P KT   C+LHWR  LN N +++G+GTW AEEDERL KL  V
Sbjct:  292 EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 382          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.670e-16
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  100 EQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPK----WSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEV 360
            E  +A++ A +E + P DW  E T+ L +LV++L       W +IA   P KT   C+LHWR  LN N +++G+GTW AEEDERL KL  V
Sbjct:  421 EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 511          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: M1VG35_CYAM1 (MYB-related protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VG35_CYAM1)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-9
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  154 WTPELTQCLRDLVDELGP-KWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            WT    Q L+ LV E GP +W+AIA K+PG+TA  C LHWR  L+P        +WT EEDE+L  LV   G +
Sbjct:  196 WTYAEDQQLKALVKEQGPGRWTAIAAKLPGRTAKDCQLHWRRCLDPRI---SRSSWTIEEDEKLKMLVSRHGRR 266          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A067U0K4_GALM3 (Uncharacterized protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067U0K4_GALM3)

HSP 1 Score: 64.3 bits (155), Expect = 2.210e-9
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            WTP   + L +L +  GPKWSAIA +IPG+T  AC   +R  L+PN        WT EEDE L ++   +G K
Sbjct:   63 WTPSEDKMLLELYESFGPKWSAIARQIPGRTDDACSKRYREALDPNLK---KDQWTQEEDELLVEVYNRIGGK 132          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A409VXP2_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409VXP2_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 5.560e-9
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            WTP+  + L +L D LGPKWSAIA +IPG+T  AC   +R  L+P+        WT EED+ L      +G K
Sbjct:   63 WTPDEDRMLIELYDHLGPKWSAIARQIPGRTDDACSKRYREALDPSLK---KDEWTPEEDDLLIDTYNRIGGK 132          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A0C2X9A2_AMAMK (Uncharacterized protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2X9A2_AMAMK)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-9
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
            WTP+  + L +L + LGP+WSAIA +IPG+T  AC   +R  L+P+        WT EED +L ++ + VG K
Sbjct:   66 WTPDEDRVLVELHEHLGPRWSAIAREIPGRTDDACSKRYREALDPSLK---KDEWTREEDAKLMEVYDRVGGK 135          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A2H4Z461_9AGAR (Putative homeodomain protein n=1 Tax=Volvariella volvacea TaxID=36659 RepID=A0A2H4Z461_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 5.680e-9
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVG 366
            WT E  + LR      GPKWSAIA +IPG+T  AC   +R  L+P+ + KGS  W+AEED RL +    +G
Sbjct:   72 WTAEEDELLRKFYMNYGPKWSAIAREIPGRTDDACSKRYREALDPS-LKKGS--WSAEEDARLQEAYSRIG 139          
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A8H6T7M3_MYCCL (Myb domain protein 4r1 n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6T7M3_MYCCL)

HSP 1 Score: 62.8 bits (151), Expect = 7.450e-9
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 1
Query:  151 DWTPELTQCLRDLVDELGPKWSAIAEKI-PGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLV 354
            +WT E+ Q +RD V   G  W+ +A+ + P  TA  C  HW   L+P      SGTWTAEEDERL K V
Sbjct:  221 NWTDEMDQRMRDAVGRYGQCWALVAKYVSPALTAAQCSSHWSRSLDP---ALRSGTWTAEEDERLKKAV 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ9_ECTSI1.130e-5575.19Putative c-myb-like transcription factor n=1 Tax=E... [more]
A0A6H5JMK3_9PHAE7.340e-5375.19MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5KQ17_9PHAE6.870e-1645.05MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LH85_ECTSI7.670e-1645.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M1VG35_CYAM11.420e-947.30MYB-related protein n=1 Tax=Cyanidioschyzon merola... [more]
A0A067U0K4_GALM32.210e-943.84Uncharacterized protein n=1 Tax=Galerina marginata... [more]
A0A409VXP2_9AGAR5.560e-943.84Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
A0A0C2X9A2_AMAMK5.620e-942.47Uncharacterized protein (Fragment) n=1 Tax=Amanita... [more]
A0A2H4Z461_9AGAR5.680e-946.48Putative homeodomain protein n=1 Tax=Volvariella v... [more]
A0A8H6T7M3_MYCCL7.450e-946.38Myb domain protein 4r1 n=1 Tax=Mycena chlorophos T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204097contigH-elongata_contig204097:185..1082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue5.9e-46
Seed eggNOG ortholog2880.D7FJZ9
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-18_003010.1
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204097.5809.1prot_H-elongata_contig204097.5809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204097 185..1082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.1425276-CDS-H-elongata_contig204097:184..3131622930146.1425276-CDS-H-elongata_contig204097:184..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 185..313 +
1691679298.721991-CDS-H-elongata_contig204097:184..3131691679298.721991-CDS-H-elongata_contig204097:184..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 185..313 +
1622930146.1559985-CDS-H-elongata_contig204097:523..5961622930146.1559985-CDS-H-elongata_contig204097:523..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 524..596 +
1691679298.7332838-CDS-H-elongata_contig204097:523..5961691679298.7332838-CDS-H-elongata_contig204097:523..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 524..596 +
1622930146.1706657-CDS-H-elongata_contig204097:885..10821622930146.1706657-CDS-H-elongata_contig204097:885..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 886..1082 +
1691679298.7436895-CDS-H-elongata_contig204097:885..10821691679298.7436895-CDS-H-elongata_contig204097:885..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204097 886..1082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204097.5809.1

>prot_H-elongata_contig204097.5809.1 ID=prot_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
QSTQRANVGKSRSSTGASQTPRTKRSSTIYGMKEQSRAIKDANLEAHSPK
DWTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMV
KGSGTWTAEEDERLSKLVEVVGMKVRLRLFLL*
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mRNA from alignment at H-elongata_contig204097:185..1082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204097.5809.1 ID=mRNA_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=898bp|location=Sequence derived from alignment at H-elongata_contig204097:185..1082+ (Himanthalia elongata Himel1 dioecious)
CAGAGTACTCAACGGGCGAACGTCGGGAAGAGCCGCTCCTCGACCGGAGC ATCCCAGACGCCCCGAACCAAGCGCTCTTCCACGATCTATGGCATGAAGG AACAATCTCGGGCCATCAAGGACGCAAACGTGAGAAACGATAGAAACGGT GGACAAACGAGGGAAAAAAAAAAAACGCCTGCTCAAACGTGCGCTTTCTC CCTCCCTCCCTCCCTCTCTATTGTATGTCTGTGGTACCTCTCACAAGTAA GGCTCTCTCTCAATAGTAAAAATCTGGCATAAAAACAAATAATTATGCCA ACAAACCCACGTGCTCGAAAAATCTACAACACGTTACAGTTGGAAGCTCA CAGCCCCAAGGACTGGACGCCGGAGCTCACCCAGTGCCTGCGTGACCTCG TGGACGAACTTGGTAAGAATCCCCTCGGCGTTTTTTTGTAGCAGCCAGAA ACGAAACATAAACTTCGGCAGGCGCTCACCTCCCCAAGCAGGCCACCCCA CCACCCCCCCCCCCGAACACACACGCCCACGAGTTCTGGAGATCAAAATA TGTGTTCGACGAGCGTCCAGCGATAGCAACGACAACAATTCTTTCGACGA GCGTCCAGCGATAGCAACGACAACATTAACGACAACAATTCTCGCGCGCG CTATCGTACGTGTGCGCCGCCCATGGCTTGGCTTGGCTTGATCTGGCACA GGCCCCAAGTGGTCTGCCATCGCCGAAAAGATTCCGGGCAAGACGGCGAC AGCGTGCATGCTCCACTGGCGCGTCGGCCTCAATCCGAACCACATGGTGA AGGGAAGCGGAACCTGGACTGCGGAGGAAGACGAGAGGCTGTCCAAGCTC GTCGAGGTCGTGGGCATGAAGGTGCGTTTGCGCCTTTTCTTGCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig204097:185..1082+

>mRNA_H-elongata_contig204097.5809.1 ID=mRNA_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig204097:185..1082+ (Himanthalia elongata Himel1 dioecious)
CAGAGTACTCAACGGGCGAACGTCGGGAAGAGCCGCTCCTCGACCGGAGC
ATCCCAGACGCCCCGAACCAAGCGCTCTTCCACGATCTATGGCATGAAGG
AACAATCTCGGGCCATCAAGGACGCAAACCAGAGTACTCAACGGGCGAAC
GTCGGGAAGAGCCGCTCCTCGACCGGAGCATCCCAGACGCCCCGAACCAA
GCGCTCTTCCACGATCTATGGCATGAAGGAACAATCTCGGGCCATCAAGG
ACGCAAACTTGGAAGCTCACAGCCCCAAGGACTGGACGCCGGAGCTCACC
CAGTGCCTGCGTGACCTCGTGGACGAACTTGTTGGAAGCTCACAGCCCCA
AGGACTGGACGCCGGAGCTCACCCAGTGCCTGCGTGACCTCGTGGACGAA
CTTGGCCCCAAGTGGTCTGCCATCGCCGAAAAGATTCCGGGCAAGACGGC
GACAGCGTGCATGCTCCACTGGCGCGTCGGCCTCAATCCGAACCACATGG
TGAAGGGAAGCGGAACCTGGACTGCGGAGGAAGACGAGAGGCTGTCCAAG
CTCGTCGAGGTCGTGGGCATGAAGGTGCGTTTGCGCCTTTTCTTGCTTTA
GGCCCCAAGTGGTCTGCCATCGCCGAAAAGATTCCGGGCAAGACGGCGAC
AGCGTGCATGCTCCACTGGCGCGTCGGCCTCAATCCGAACCACATGGTGA
AGGGAAGCGGAACCTGGACTGCGGAGGAAGACGAGAGGCTGTCCAAGCTC
GTCGAGGTCGTGGGCATGAAGGTGCGTTTGCGCCTTTTCTTGCTTTAG
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