mRNA_H-elongata_contig20385.5800.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI) HSP 1 Score: 248 bits (632), Expect = 3.200e-73 Identity = 115/153 (75.16%), Postives = 131/153 (85.62%), Query Frame = 1
Query: 1 FVVPLLNFCQTEFHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
FV PLL F + EFHFSHVW+ +VPM PS + L+MTN G LPL F+V+T PPFSVD EHSL VGE+G+L+VGFDPGYRGDSQS RYESKLSVTYR+H QKDGL VVG VA+PNLDFEYT+VSFGCVLNDTTMTK VR+TN+S+VDC F WSFL
Sbjct: 1147 FVAPLLCFSRPEFHFSHVWEPEVPMTPSFEELEMTNTGRLPLDFSVRTHPPFSVDAVEHSLGVGETGKLTVGFDPGYRGDSQSYRYESKLSVTYRDHPQKDGLLVVGAVAYPNLDFEYTKVSFGCVLNDTTMTKAVRVTNNSVVDCTFSWSFL 1299
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE) HSP 1 Score: 218 bits (555), Expect = 7.390e-63 Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 1
Query: 1 FVVPLLNFCQTEFHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
FV PLL F + EFHFSHVW+ +VPM PS + L+MTN G LPL F+V+T PPFSVD EHSL VGE+G+L+VGFDPGYRGDSQS RYESKLSVTYR+H QKDGL VVG+V SFGCVLNDTTMTK VR+TN+S+VDC F WSFL
Sbjct: 1098 FVAPLLCFSRPEFHFSHVWEPEVPMTPSFEELEMTNTGRLPLDFSVRTHPPFSVDAVEHSLGVGETGKLTVGFDPGYRGDSQSYRYESKLSVTYRDHPQKDGLLVVGEV------------SFGCVLNDTTMTKAVRVTNNSVVDCTFNWSFL 1238
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN) HSP 1 Score: 160 bits (406), Expect = 8.380e-43 Identity = 74/152 (48.68%), Postives = 104/152 (68.42%), Query Frame = 1
Query: 4 VVPLLNFCQTEFHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
+ PLL+F F H + DVP+ P S++L + NN +LPL F ++ PFSVD EH+L+ E + V FDPGY+GD QS + +++L+V Y H Q+D + +VG++ FPNL FEY+ V+FGC+LNDTTMT VR+TN S V+ AF W+FL
Sbjct: 1015 IEPLLSFSSPSLGFVHDHEPDVPIQPQSQALTLKNNAVLPLVFALRCAVPFSVDAWEHTLEPDEETTVRVDFDPGYKGDRQSQKLDTRLTVAYHQHPQRDSVGLVGEINFPNLHFEYSVVNFGCILNDTTMTMRVRVTNCSKVETAFSWAFL 1166
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.550e-42 Identity = 75/153 (49.02%), Postives = 102/153 (66.67%), Query Frame = 1
Query: 1 FVVPLLNFCQTEFHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
F+ PLL+ +S+ W+ DVP+ +K + MTN LPL F +K Q P+++D EHSL ES ++V FDPGY+ D QS ES L+ Y+ H Q+D + + G++ FPNLDFEYT ++FGCVLNDTT T LV++TN S VD AF WSF+
Sbjct: 419 FMNPLLDLSVPALDYSYTWEKDVPIEIITKPMTMTNRTPLPLHFVLKAQIPYTIDQWEHSLAPQESATINVDFDPGYKADRQSHIAESALTAVYKGHPQRDNIKLTGEINFPNLDFEYTVINFGCVLNDTTKTMLVKVTNVSKVDTAFSWSFV 571
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A835YJI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI6_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.550e-33 Identity = 71/165 (43.03%), Postives = 94/165 (56.97%), Query Frame = 1
Query: 1 FVVPLLNFCQTEFHFSHVWDSDVPMVPSS--------------KSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWS 453
FV PLL F F++ +P ++ + L +TN G LPL T++T PFSVD EHSL G + +SV FD GYRGD + E L+ Y H Q+D +P+VGD+A+PNL RV+FGCVLNDTT T+ VR+TN + V AFRW+
Sbjct: 1073 FVTPLLQFSAPALRFAYTHAPPLPPGAAAGXXXXXXXXXXCQAQPLTLTNAGPLPLEVTLRTSAPFSVDTWEHSLAPGAATAVSVLFDAGYRGDRVAHAAEGALTAAYAGHPQRDAIPLVGDIAYPNLALSARRVAFGCVLNDTTATRAVRVTNCTRVPAAFRWT 1237
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A485LSA9_9STRA (Aste57867_25117 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSA9_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.620e-33 Identity = 68/154 (44.16%), Postives = 96/154 (62.34%), Query Frame = 1
Query: 1 FVVPLLNFCQTE-FHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
F+ P ++ Q HFS+ + DV + ++ L TN LPL F +KTQ PFSVD+ E +L+ ES L+V F PGY+ D S SKLS +Y H Q+D + + G++ FPNL+FEY+R+ FGC+LNDT + V++TN S V AF W F+
Sbjct: 1309 FINPKMDSSQASGMHFSYTYAPDVDIETQTQPLVFTNVCELPLSFVLKTQVPFSVDMWEATLQPQESIALNVEFYPGYKDDHMSRVINSKLSTSYTGHPQRDSIELKGEIFFPNLEFEYSRIDFGCILNDTQKSLTVKVTNISKVTTAFHWVFI 1462
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A7S1CHV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHV8_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.280e-33 Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 1
Query: 94 LQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCA 441
+ + N LPL F ++T PFS+D E SL+ E ++V FDPGY+ D QS E KL+ YR+H ++D ++GDV FPN++FEYTRV FG VLNDTT + VR+TN+S +DCA
Sbjct: 3 MTLRNVSKLPLSFVLRTAQPFSLDRWEFSLEPDEEVVVNVEFDPGYKDDCQSHVAEKKLTAVYRDHPRRDAWNLIGDVNFPNVEFEYTRVDFGTVLNDTTKSTTVRVTNTSKIDCA 118
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A8K1CD31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD31_PYTOL) HSP 1 Score: 130 bits (328), Expect = 2.640e-32 Identity = 67/156 (42.95%), Postives = 96/156 (61.54%), Query Frame = 1
Query: 1 FVVPLLN--FCQTEFHFSHVWDS-DVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
FV P LN +F + H+ D+P S+ L +TN LPL FT++TQPPFS+D E L+ GE + +V F PGY+ D Q + K+++ Y H Q+D + ++GD++FPNL FE T++ FGC LNDT + V +TN S V+ AFRW F+
Sbjct: 1006 FVEPKLNPSVSSLQFEYIHIPPGRDIPR--QSQPLSLTNVCALPLTFTMRTQPPFSLDCWEAELEPGEKVDFTVEFYPGYKDDHQCRVIQGKVAIAYLGHPQRDSVELIGDISFPNLSFETTKIDFGCTLNDTQKSLTVVVTNVSKVETAFRWVFV 1159
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A1V9Y885_9STRA (Hydrocephalus-inducing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y885_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.680e-31 Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 43 FSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
FS++++ V M S+ L +TN LPL F ++TQ PFSVD+ E L+ ES EL+V F PGY+ D S KL ++Y H QKD L + G++ FPNL+FEY+++ FG +LNDT + V++TN S V F W F+
Sbjct: 1006 FSYIYEEGVDMETQSQPLTLTNVCELPLSFVLRTQVPFSVDMWESMLQPKESVELNVEFYPGYKDDHMSRSINGKLVISYTGHPQKDSLDLRGEIGFPNLEFEYSKIDFGTILNDTQKSMHVKVTNVSKVPTVFHWVFI 1144
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Match: A0A1V9Z071_9STRA (Hydrocephalus-inducing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z071_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.690e-31 Identity = 63/139 (45.32%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 43 FSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPPFSVDIAEHSLKVGESGELSVGFDPGYRGDSQSCRYESKLSVTYRNHSQKDGLPVVGDVAFPNLDFEYTRVSFGCVLNDTTMTKLVRITNSSIVDCAFRWSFL 459
FS+++ V M S+ L +TN LPL F ++TQ PFSVD E L+ E EL+V F PGY+ D S KL +Y H QKD L + G++ FPNL+FE++R+ FGC+LNDT + LV++TN S V+ F W F+
Sbjct: 1011 FSYIYAQGVEMETQSQPLTLTNACELPLSFVLRTQVPFSVDTWEAVLQPKEKMELNVEFYPGYKDDHLSRVINGKLVTSYTGHPQKDSLDLRGEIGFPNLEFEFSRIDFGCILNDTQKSMLVKVTNVSKVETQFHWVFI 1149 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20385.5800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20385.5800.1 >prot_H-elongata_contig20385.5800.1 ID=prot_H-elongata_contig20385.5800.1|Name=mRNA_H-elongata_contig20385.5800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp FVVPLLNFCQTEFHFSHVWDSDVPMVPSSKSLQMTNNGLLPLGFTVKTQPback to top mRNA from alignment at H-elongata_contig20385:442..2048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20385.5800.1 ID=mRNA_H-elongata_contig20385.5800.1|Name=mRNA_H-elongata_contig20385.5800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1607bp|location=Sequence derived from alignment at H-elongata_contig20385:442..2048- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20385:442..2048- >mRNA_H-elongata_contig20385.5800.1 ID=mRNA_H-elongata_contig20385.5800.1|Name=mRNA_H-elongata_contig20385.5800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig20385:442..2048- (Himanthalia elongata Himel1 dioecious)back to top |