mRNA_H-elongata_contig2036.5789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2036.5789.1
Unique NamemRNA_H-elongata_contig2036.5789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.200e-54
Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG +F+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGE+  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  126 RCDKGGENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLDPS 269
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.870e-54
Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ G SER+G+TLA +TR  +KDG FP  +W +L  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:   15 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 158
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.410e-53
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:   38 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 181
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.390e-52
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  172 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 315
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5KHY1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.520e-52
Identity = 84/145 (57.93%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE TG EF+  C N+ I +E  ATN+PQQ+ V ER+G++LA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+H    D++GLR IGAR FVHH+ Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  120 RCDKGGEKTGSEFRDYCKNSAIKLEYAATNTPQQSAVLERDGQSLAGVTRCLLKDGVFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHKKSPDLSGLRVIGARTFVHHDRYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 263
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5JCI9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.900e-52
Identity = 83/143 (58.04%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYV 429
            RC+KGGE+ G E +  C  + I +E  ATN+PQ+ GVSER+G+TLA +TR  ++DG FP  +WGEL  T  YL+ R  H+AL GAT Y KM+N   D++ LRAIGARA+VHHE Y +KLDD+ FEGKL CG+  DSKTYRIYV
Sbjct:  184 RCDKGGENPGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTTAYLTNRIAHAALGGATPYSKMYNTTPDLSRLRAIGARAYVHHERYKKKLDDRAFEGKL-CGYGPDSKTYRIYV 325
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 8.810e-52
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE   +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  172 RCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERCRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 315
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 9.820e-52
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  172 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 315
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.020e-51
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D++GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  172 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 315
[Close]
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.530e-51
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 1 
Query:    1 RCNKGGEHTGREFKIICINAGINVE*TATNSPQQNGVSERNGKTLAQITRYAMKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLRAIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS 435
            RC+KGGE+TG EF+  C N+ I +E  ATN+PQQ GVSER+G+TLA +TR  +KDG FP  +WGEL  TA YL  R  HSAL GAT Y K+HN   D+ GLR IGARAFVHHE Y +KLDD+ FEGKL CGF  DS+TYR+  PS
Sbjct:  368 RCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIGARAFVHHERYRKKLDDRAFEGKL-CGFGLDSQTYRVLNPS 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2036.5789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF63_9PHAE2.200e-5460.69Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQ40_9PHAE2.870e-5460.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K5H2_9PHAE1.410e-5362.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE3.390e-5262.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHY1_9PHAE4.520e-5257.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCI9_9PHAE6.900e-5258.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE8.810e-5261.38Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JJR8_9PHAE9.820e-5262.07Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.020e-5162.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE1.530e-5162.07Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2036contigH-elongata_contig2036:1861..2295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size279
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.436813-UTR-H-elongata_contig2036:1860..20161622930144.436813-UTR-H-elongata_contig2036:1860..2016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2036 1861..2016 +
1691679298.070592-UTR-H-elongata_contig2036:1860..20161691679298.070592-UTR-H-elongata_contig2036:1860..2016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2036 1861..2016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.4500358-CDS-H-elongata_contig2036:2016..22951622930144.4500358-CDS-H-elongata_contig2036:2016..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2036 2017..2295 +
1691679298.0779703-CDS-H-elongata_contig2036:2016..22951691679298.0779703-CDS-H-elongata_contig2036:2016..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2036 2017..2295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2036.5789.1prot_H-elongata_contig2036.5789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2036 2017..2295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2036.5789.1

>prot_H-elongata_contig2036.5789.1 ID=prot_H-elongata_contig2036.5789.1|Name=mRNA_H-elongata_contig2036.5789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MKDGRFPAFVWGELFFTATYLSKRFLHSALVGATTYFKMHNAKADMTGLR
AIGARAFVHHETYTRKLDDQNFEGKLLCGFSQDSKTYRIYVPS
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mRNA from alignment at H-elongata_contig2036:1861..2295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2036.5789.1 ID=mRNA_H-elongata_contig2036.5789.1|Name=mRNA_H-elongata_contig2036.5789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at H-elongata_contig2036:1861..2295+ (Himanthalia elongata Himel1 dioecious)
CGATGTAACAAGGGTGGTGAGCATACCGGGAGGGAGTTCAAAATTATATG
CATCAACGCCGGGATCAACGTCGAATAAACGGCAACAAACTCACCGCAAC
AAAATGGGGTGTCCGAGAGGAACGGGAAGACACTAGCTCAGATCACGAGA
TACGCGATGAAAGATGGGAGATTCCCTGCCTTCGTGTGGGGGGAACTATT
CTTCACAGCTACGTATCTGTCCAAAAGATTTCTCCACTCTGCTCTGGTAG
GAGCTACGACATACTTCAAGATGCACAACGCGAAGGCTGACATGACCGGA
CTACGCGCCATCGGGGCCAGGGCATTTGTCCATCATGAAACCTACACGAG
GAAGCTGGACGATCAAAACTTCGAAGGCAAGTTGTTGTGTGGATTTAGCC
AAGACAGCAAGACCTACAGAATCTATGTTCCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig2036:1861..2295+

>mRNA_H-elongata_contig2036.5789.1 ID=mRNA_H-elongata_contig2036.5789.1|Name=mRNA_H-elongata_contig2036.5789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig2036:1861..2295+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGATGGGAGATTCCCTGCCTTCGTGTGGGGGGAACTATTCTTCAC
AGCTACGTATCTGTCCAAAAGATTTCTCCACTCTGCTCTGGTAGGAGCTA
CGACATACTTCAAGATGCACAACGCGAAGGCTGACATGACCGGACTACGC
GCCATCGGGGCCAGGGCATTTGTCCATCATGAAACCTACACGAGGAAGCT
GGACGATCAAAACTTCGAAGGCAAGTTGTTGTGTGGATTTAGCCAAGACA
GCAAGACCTACAGAATCTATGTTCCTTCCATGAAAGATGGGAGATTCCCT
GCCTTCGTGTGGGGGGAACTATTCTTCACAGCTACGTATCTGTCCAAAAG
ATTTCTCCACTCTGCTCTGGTAGGAGCTACGACATACTTCAAGATGCACA
ACGCGAAGGCTGACATGACCGGACTACGCGCCATCGGGGCCAGGGCATTT
GTCCATCATGAAACCTACACGAGGAAGCTGGACGATCAAAACTTCGAAGG
CAAGTTGTTGTGTGGATTTAGCCAAGACAGCAAGACCTACAGAATCTATG
TTCCTTCC
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