mRNA_H-elongata_contig20355.5788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20355.5788.1
Unique NamemRNA_H-elongata_contig20355.5788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A6H5JKV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.940e-46
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLA 270
            + MVVPPLNF+MVS GVFRSGYPIACNF FLRRLGL+SILCLCP++VLPGSL+WA + GV ME+C+LGENSPPFVSMPLAAMR AVD+L+
Sbjct:   61 DGMVVPPLNFSMVSVGVFRSGYPIACNFPFLRRLGLQSILCLCPESVLPGSLEWAKESGVSMEMCDLGENSPPFVSMPLAAMRKAVDYLS 150
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A835YPN6_9STRA (Tyrosine phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.320e-26
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGESVR 285
            + M++PPLN+AMVS GV+RSGYPIACNF FL+ L LR++LCLCP++   GSL+WA   G  + +  + +N  PFV M   A+  A+D +A    R
Sbjct:   50 QGMLIPPLNWAMVSPGVYRSGYPIACNFNFLKGLRLRTVLCLCPESCRRGSLEWAKSSGAALHLVSVSDNKEPFVWMDEQAVAQALDLIADPKSR 144
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A328DUZ2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DUZ2_9ASTE)

HSP 1 Score: 87.0 bits (214), Expect = 8.430e-20
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGESVR 285
            E ++VPPLNFAMV  GVFRSG+P   NF FL+ LGLRSI+CLCP+     +L++ +  G+++    +  +  PFV++P+  +R A+  + G ++R
Sbjct:   44 EGLLVPPLNFAMVDYGVFRSGFPDPSNFPFLQTLGLRSIICLCPEPYPEANLEFLSSNGIQLFQFGIEGSKEPFVNIPVDMIREALKVVLGNNLR 138
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: UPI00053C4088 (probable tyrosine-protein phosphatase At1g05000 isoform X2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4088)

HSP 1 Score: 83.6 bits (205), Expect = 4.660e-18
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 VVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGE 276
            ++PPLNFAMV +G+FRSG+P + NF FL+ LGLRS++ LCP+    G++++    G+R+    +  N  PFV++P   +R A++ L  E
Sbjct:   53 LIPPLNFAMVDNGIFRSGFPDSANFSFLQTLGLRSVIYLCPEPYPEGNMEFLKSNGIRLFQFGIEGNKEPFVNIPDDRIREALEVLLDE 141
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: UPI00125E2B9B (tyrosine-protein phosphatase DSP1-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E2B9B)

HSP 1 Score: 83.6 bits (205), Expect = 4.760e-18
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAV 258
            + + VPPLNFAMV  GVFRSG+P   NF FL+ LGLRSI+CLCP+     ++++ N  G+R+    +  +  PFV++P   +R A+
Sbjct:   19 DELFVPPLNFAMVDHGVFRSGFPDTANFDFLQTLGLRSIICLCPEPYPQANVEFLNANGIRLFQFGIDGSKEPFVNIPADMIREAL 104
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A2K2BMS1_POPTR (Tyrosine-protein phosphatase domain-containing protein n=7 Tax=Saliceae TaxID=238069 RepID=A0A2K2BMS1_POPTR)

HSP 1 Score: 84.0 bits (206), Expect = 5.350e-18
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   10 VVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAV 258
            ++PPLNFAMV +G+FRSG+P + NF FL+ LGLRSI+CLCP+     + ++  D G+R+    +     PFV++P   +R A+
Sbjct:   46 LIPPLNFAMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYTEATTEFLKDGGIRLYQFGIESYKEPFVNIPQDTIREAL 128
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BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A484LZB4_9ASTE (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LZB4_9ASTE)

HSP 1 Score: 83.6 bits (205), Expect = 5.890e-18
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGE 276
            E ++VPPLNFAMV  GVFRSG+P   NF FL+ LGLRSI+CLCP+     +L++ +  G+++    +  +  PFV++P+  +R A+  +  E
Sbjct:   34 EGLLVPPLNFAMVDYGVFRSGFPDPSNFPFLQTLGLRSIICLCPEPYPEANLEFLSSNGIQLFQFGIEGSKEPFVNIPVDMIREALKVVLDE 125
[Close]
BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: UPI00053C0D78 (probable tyrosine-protein phosphatase At1g05000 isoform X1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0D78)

HSP 1 Score: 83.6 bits (205), Expect = 8.640e-18
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 VVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGE 276
            ++PPLNFAMV +G+FRSG+P + NF FL+ LGLRS++ LCP+    G++++    G+R+    +  N  PFV++P   +R A++ L  E
Sbjct:   53 LIPPLNFAMVDNGIFRSGFPDSANFSFLQTLGLRSVIYLCPEPYPEGNMEFLKSNGIRLFQFGIEGNKEPFVNIPDDRIREALEVLLDE 141
[Close]
BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: UPI000901D4B5 (probable tyrosine-protein phosphatase At1g05000 isoform X2 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901D4B5)

HSP 1 Score: 82.4 bits (202), Expect = 1.230e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRMEICELGENSPPFVSMPLAAMRTAV 258
            + + VPPLNFAMV  GVFRSG+P   NF FL+ LGLRSI+CLCP+     ++++ N  G+R+    +  +  PFV++P   +R A+
Sbjct:   19 DELFVPPLNFAMVDHGVFRSGFPDTDNFDFLQTLGLRSIICLCPEPYPQANVEFLNANGIRLFQFGIDGSKEPFVNIPADMIREAL 104
[Close]
BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Match: A0A3Q7IRK7_SOLLC (Tyrosine-protein phosphatase domain-containing protein n=8 Tax=Solanum TaxID=4107 RepID=A0A3Q7IRK7_SOLLC)

HSP 1 Score: 82.4 bits (202), Expect = 1.980e-17
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 ENMVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSLQWANDVGVRM-EICELGENSPPFVSMPLAAMRTAVDFLAGESVR 285
            E ++VPPLNFAMV  GVFRSG+P   NF FL+ LGLRSI+ LCP+     ++++ N  G+R+ +    G   PP V++P   ++ A+  +  E  R
Sbjct:   39 EGLLVPPLNFAMVDYGVFRSGFPDTANFAFLQTLGLRSIIYLCPERYPEDNVEFLNANGIRLFQFAIEGSKEPPLVNIPEETIKEALKVVLDEKNR 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20355.5788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV4_9PHAE1.940e-4680.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN6_9STRA2.320e-2649.47Tyrosine phosphatase family-domain-containing prot... [more]
A0A328DUZ2_9ASTE8.430e-2043.16Uncharacterized protein n=1 Tax=Cuscuta australis ... [more]
UPI00053C40884.660e-1842.70probable tyrosine-protein phosphatase At1g05000 is... [more]
UPI00125E2B9B4.760e-1845.35tyrosine-protein phosphatase DSP1-like n=2 Tax=Ipo... [more]
A0A2K2BMS1_POPTR5.350e-1844.58Tyrosine-protein phosphatase domain-containing pro... [more]
A0A484LZB4_9ASTE5.890e-1843.48Tyrosine-protein phosphatase domain-containing pro... [more]
UPI00053C0D788.640e-1842.70probable tyrosine-protein phosphatase At1g05000 is... [more]
UPI000901D4B51.230e-1745.35probable tyrosine-protein phosphatase At1g05000 is... [more]
A0A3Q7IRK7_SOLLC1.980e-1742.71Tyrosine-protein phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20355contigH-elongata_contig20355:5015..5556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue7.8e-37
Seed eggNOG ortholog2880.D7FKK3
KEGG koko:K18045
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic
Ec32 orthologEc-12_001770.1
Exons2
Model size285
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20355.5788.1prot_H-elongata_contig20355.5788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20355 5021..5556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.3755777-UTR-H-elongata_contig20355:5014..50201622930144.3755777-UTR-H-elongata_contig20355:5014..5020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20355 5015..5020 +
1691679298.033034-UTR-H-elongata_contig20355:5014..50201691679298.033034-UTR-H-elongata_contig20355:5014..5020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20355 5015..5020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.3908217-CDS-H-elongata_contig20355:5020..50501622930144.3908217-CDS-H-elongata_contig20355:5020..5050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20355 5021..5050 +
1691679298.0549242-CDS-H-elongata_contig20355:5020..50501691679298.0549242-CDS-H-elongata_contig20355:5020..5050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20355 5021..5050 +
1622930144.4014168-CDS-H-elongata_contig20355:5307..55561622930144.4014168-CDS-H-elongata_contig20355:5307..5556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20355 5308..5556 +
1691679298.0628436-CDS-H-elongata_contig20355:5307..55561691679298.0628436-CDS-H-elongata_contig20355:5307..5556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20355 5308..5556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20355.5788.1

>prot_H-elongata_contig20355.5788.1 ID=prot_H-elongata_contig20355.5788.1|Name=mRNA_H-elongata_contig20355.5788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MVVPPLNFAMVSDGVFRSGYPIACNFRFLRRLGLRSILCLCPDNVLPGSL
QWANDVGVRMEICELGENSPPFVSMPLAAMRTAVDFLAGESVR
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mRNA from alignment at H-elongata_contig20355:5015..5556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20355.5788.1 ID=mRNA_H-elongata_contig20355.5788.1|Name=mRNA_H-elongata_contig20355.5788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig20355:5015..5556+ (Himanthalia elongata Himel1 dioecious)
GAGAACATGGTTGTTCCGCCTCTGAATTTTGCAATGGTGAGAAGCGTCTC
TCTGGATGCTCGCCAAAGTGTCGGTGTTAAGATCGCCGAACATCTTTCAA
CTTGCACAACGGTATTGACAGCCGTTGAGCTCTTAGTTCGGTTGTAATGT
TGTAATTATGTTTCGGTCACGTTCACCGAGCGTACATCCGACATCTTTTT
AATGAAGACAGCTTGATGCTGGTGCCACATCCAACCCCCGTGAATCTCTT
GATTTTTGTATTTTGACTGATGATGGCTCTCGTATATTATAAGGTATCTG
ATGGGGTTTTCCGAAGTGGCTACCCTATCGCCTGTAACTTCCGCTTTCTT
CGACGCCTGGGACTCCGGAGTATACTGTGCTTGTGCCCGGATAACGTGCT
TCCCGGGTCGCTGCAATGGGCCAACGACGTTGGAGTTCGGATGGAAATAT
GCGAACTGGGAGAGAACAGCCCACCCTTCGTATCCATGCCCCTGGCAGCT
ATGAGGACTGCTGTCGATTTTCTCGCGGGTGAGAGCGTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig20355:5015..5556+

>mRNA_H-elongata_contig20355.5788.1 ID=mRNA_H-elongata_contig20355.5788.1|Name=mRNA_H-elongata_contig20355.5788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig20355:5015..5556+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGTTCCGCCTCTGAATTTTGCAATGATGGTTGTTCCGCCTCTGAA
TTTTGCAATGGTATCTGATGGGGTTTTCCGAAGTGGCTACCCTATCGCCT
GTAACTTCCGCTTTCTTCGACGCCTGGGACTCCGGAGTATACTGTGCTTG
TGCCCGGATAACGTGCTTCCCGGGTCGCTGCAATGGGCCAACGACGTTGG
AGTTCGGATGGAAATATGCGAACTGGGAGAGAACAGCCCACCCTTCGTAT
CCATGCCCCTGGCAGCTATGAGGACTGCTGTCGATTTTCTCGCGGGTGAG
AGCGTTCGCGTATCTGATGGGGTTTTCCGAAGTGGCTACCCTATCGCCTG
TAACTTCCGCTTTCTTCGACGCCTGGGACTCCGGAGTATACTGTGCTTGT
GCCCGGATAACGTGCTTCCCGGGTCGCTGCAATGGGCCAACGACGTTGGA
GTTCGGATGGAAATATGCGAACTGGGAGAGAACAGCCCACCCTTCGTATC
CATGCCCCTGGCAGCTATGAGGACTGCTGTCGATTTTCTCGCGGGTGAGA
GCGTTCGC
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