mRNA_H-elongata_contig203537.5782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203537.5782.1
Unique NamemRNA_H-elongata_contig203537.5782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: D7G1E8_ECTSI (Mannosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1E8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.990e-11
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 MYGVKAEIVRSSVTRSI-SRWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            M+G+ + +    +  ++  RWVWPE +VLLFNT+ NRSSEWGEMPFYW
Sbjct:  215 MWGIPSLVASFLLDSALWGRWVWPESQVLLFNTVANRSSEWGEMPFYW 262
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A024G2Y5_9STRA (Mannosyltransferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2Y5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.160e-9
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 TTMYGVKAEIVRSSVTRSI-----SRWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            T  +G+ A  +   VT S+     +RWVWPEGEVL +NT+QN+S EWG MPF W
Sbjct:  210 TIQHGLIASFIALFVTISVDSYYWNRWVWPEGEVLWYNTVQNKSHEWGTMPFLW 263
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A5J4XFB6_9CHLO (Mannosyltransferase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFB6_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.970e-9
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW+WPEGEVL FNT QNRS EWG MPF+W
Sbjct:  230 RWLWPEGEVLWFNTAQNRSGEWGTMPFHW 258
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: I0YVA7_COCSC (Mannosyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YVA7_COCSC)

HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    7 MYGVKAEIVRSSVTRSIS-----RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            + G+ A     ++T S+      RW+WPEGEVL FNT +NRSSEWG MP +W
Sbjct:  202 LIGIAAAAASLALTVSVDSVFWGRWLWPEGEVLWFNTAENRSSEWGVMPLHW 253
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A061RWG0_9CHLO (Mannosyltransferase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RWG0_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-8
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RWVWPEGEVL FNT+ NRSSEWG MP +W
Sbjct:  244 RWVWPEGEVLWFNTVLNRSSEWGVMPLHW 272
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A0V0J6M2_SCHSO (Mannosyltransferase n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J6M2_SCHSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.500e-8
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW+WPEGEV  FN ++N+SS+WG +PFYW
Sbjct:  232 RWLWPEGEVFYFNAIENKSSQWGTLPFYW 260
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A0X3NUC2_SCHSO (Mannosyltransferase n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3NUC2_SCHSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW+WPEGEV  FN ++N+SS+WG +PFYW
Sbjct:  232 RWLWPEGEVFYFNAIENKSSQWGTLPFYW 260
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: F0ZPL4_DICPU (Mannosyltransferase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZPL4_DICPU)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW++PEGEV LFNT++N+SSEWG  PFYW
Sbjct:  266 RWLYPEGEVFLFNTVENKSSEWGTSPFYW 294
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A654GKS5_9CEST (Mannosyltransferase n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GKS5_9CEST)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW+WPEGEV  FN ++N+SS+WG +PFYW
Sbjct:  258 RWLWPEGEVFYFNAIENKSSQWGTLPFYW 286
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BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Match: A0A7M3QAK0_SPIER (U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QAK0_SPIER)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   61 RWVWPEGEVLLFNTLQNRSSEWGEMPFYW 147
            RW+WPEGEV  FN ++N+SS+WG +PFYW
Sbjct:  802 RWLWPEGEVFYFNAIENKSSQWGTLPFYW 830
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203537.5782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1E8_ECTSI6.990e-1156.25Mannosyltransferase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A024G2Y5_9STRA1.160e-951.85Mannosyltransferase n=1 Tax=Albugo candida TaxID=6... [more]
A0A5J4XFB6_9CHLO2.970e-979.31Mannosyltransferase n=1 Tax=Trebouxia sp. A1-2 Tax... [more]
I0YVA7_COCSC7.600e-950.00Mannosyltransferase n=1 Tax=Coccomyxa subellipsoid... [more]
A0A061RWG0_9CHLO1.420e-879.31Mannosyltransferase n=2 Tax=Tetraselmis sp. GSL018... [more]
A0A0V0J6M2_SCHSO3.500e-865.52Mannosyltransferase n=3 Tax=Schistocephalus solidu... [more]
A0A0X3NUC2_SCHSO3.630e-865.52Mannosyltransferase n=3 Tax=Schistocephalus solidu... [more]
F0ZPL4_DICPU3.640e-872.41Mannosyltransferase n=1 Tax=Dictyostelium purpureu... [more]
A0A654GKS5_9CEST3.640e-865.52Mannosyltransferase n=1 Tax=Sparganum proliferum T... [more]
A0A7M3QAK0_SPIER3.650e-865.52U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203537contigH-elongata_contig203537:531..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog2880.D7G1E8
Preferred nameALG12
KEGG rclassRC00055,RC00523
KEGG koko:K01873,ko:K03847,ko:K11349,ko:K20471
KEGG ReactionR03665,R06260
KEGG Pathwayko00510,ko00513,ko00970,ko01100,map00510,map00513,map00970,map01100
KEGG ModuleM00055,M00359,M00360
GOsGO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006508,GO:0006511,GO:0006629,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031224,GO:0031984,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0052824,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698
EggNOG free text desc.dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity
EggNOG OGsKOG2516@1,KOG2516@2759
EC2.4.1.260,6.1.1.9
COG Functional cat.M
CAZyGT22
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01007,ko03016,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-mannosyltransferase, family GT22
Ec32 orthologEc-07_000750.1
Exons1
Model size150
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.7313375-CDS-H-elongata_contig203537:530..6741622930143.7313375-CDS-H-elongata_contig203537:530..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203537 531..674 -
1691679297.821168-CDS-H-elongata_contig203537:530..6741691679297.821168-CDS-H-elongata_contig203537:530..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203537 531..674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.751006-UTR-H-elongata_contig203537:674..6801622930143.751006-UTR-H-elongata_contig203537:674..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203537 675..680 -
1691679297.8332562-UTR-H-elongata_contig203537:674..6801691679297.8332562-UTR-H-elongata_contig203537:674..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203537 675..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203537.5782.1prot_H-elongata_contig203537.5782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203537 531..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203537.5782.1

>prot_H-elongata_contig203537.5782.1 ID=prot_H-elongata_contig203537.5782.1|Name=mRNA_H-elongata_contig203537.5782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MYGVKAEIVRSSVTRSISRWVWPEGEVLLFNTLQNRSSEWGEMPFYW*
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mRNA from alignment at H-elongata_contig203537:531..680-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203537.5782.1 ID=mRNA_H-elongata_contig203537.5782.1|Name=mRNA_H-elongata_contig203537.5782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig203537:531..680- (Himanthalia elongata Himel1 dioecious)
ACAACTATGTATGGAGTAAAGGCAGAGATCGTCCGTTCGTCCGTTACCCG
CTCCATAAGTAGGTGGGTGTGGCCCGAGGGTGAAGTATTGCTGTTCAACA
CCTTGCAGAACCGGAGCTCGGAATGGGGAGAGATGCCCTTCTACTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig203537:531..680-

>mRNA_H-elongata_contig203537.5782.1 ID=mRNA_H-elongata_contig203537.5782.1|Name=mRNA_H-elongata_contig203537.5782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig203537:531..680- (Himanthalia elongata Himel1 dioecious)
ATGTATGGAGTAAAGGCAGAGATCGTCCGTTCGTCCGTTACCCGCTCCAT
AAGTAGGTGGGTGTGGCCCGAGGGTGAAGTATTGCTGTTCAACACCTTGC
AGAACCGGAGCTCGGAATGGGGAGAGATGCCCTTCTACTGGTAAATGTAT
GGAGTAAAGGCAGAGATCGTCCGTTCGTCCGTTACCCGCTCCATAAGTAG
GTGGGTGTGGCCCGAGGGTGAAGTATTGCTGTTCAACACCTTGCAGAACC
GGAGCTCGGAATGGGGAGAGATGCCCTTCTACTGGTAA
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