mRNA_H-elongata_contig107004.578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107004.578.1
Unique NamemRNA_H-elongata_contig107004.578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A0V0HMV8_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HMV8_SOLCH)

HSP 1 Score: 62.4 bits (150), Expect = 3.270e-10
Identity = 31/70 (44.29%), Postives = 37/70 (52.86%), Query Frame = 1
Query:   16 CERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            CE C   K  R    KS   R+ EKL  V  D+ G     S G N Y ++F DD+SRMTW YFL  K +V
Sbjct:   20 CESCQMGKVHRKSFPKSATWRATEKLELVHTDVCGPMQASSLGHNKYFVLFIDDLSRMTWVYFLSNKSQV 89          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A4Y2DBF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2DBF7_ARAVE)

HSP 1 Score: 63.5 bits (153), Expect = 5.220e-10
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 GKLQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            G+L  C  C   K  R P  K    R+ E LG V  DL G   V+S GG+ Y + F DD+SRMT+ YFL+ K EV
Sbjct:  314 GELDDCTSCIKGKMHRQPFPKGKTKRAKEILGIVHTDLCGPMNVESIGGSQYFVSFIDDLSRMTFVYFLKHKSEV 388          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A4Y2BEM1_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BEM1_ARAVE)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-8
Identity = 33/75 (44.00%), Postives = 40/75 (53.33%), Query Frame = 1
Query:    1 GKLQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            G+L  C  C   K  R P  K     + E LG V  DL G   V S GG+ Y + F DD+SRMT+ YFL+ K EV
Sbjct:    9 GELDDCTSCIRGKMHRQPFPKGKTKWAKEILGIVHTDLCGPMNVASIGGSQYFVSFIDDLSRMTFVYFLKLKSEV 83          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: UPI001C721A4D (uncharacterized protein LOC110282542 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C721A4D)

HSP 1 Score: 59.3 bits (142), Expect = 1.620e-8
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query:    1 GKLQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            GK+  C  C   K  + P  K    R+ E LG V  DL G   V S GG+ Y + F DD+SRMT+ YF++ K EV
Sbjct:  425 GKINDCIPCIKGKMHKQPFPKGKAKRAKELLGLVHSDLCGPMSVLSIGGSRYFISFIDDLSRMTFVYFIKNKFEV 499          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A2I0KGW2_PUNGR (gag_pre-integrs domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KGW2_PUNGR)

HSP 1 Score: 58.2 bits (139), Expect = 3.980e-8
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1
Query:    4 KLQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKK 216
            K  PC  C   K  R P K S+  R+ EKL  V  D+ G T   S  G+ Y +IF DD++RM+W YFL+ K
Sbjct:  259 KESPCTACLLGKQSRLPFK-SSSWRATEKLQLVHTDVCGPTSEASLSGSKYFLIFVDDMTRMSWIYFLKAK 328          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A438E1L6_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E1L6_VITVI)

HSP 1 Score: 57.4 bits (137), Expect = 7.740e-8
Identity = 28/72 (38.89%), Postives = 37/72 (51.39%), Query Frame = 1
Query:   10 QPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            Q CE C   K  R P  ++   R+  KL  +  D+ G     S   N Y  +F DD+SRMTW YFL+ K +V
Sbjct:  381 QTCESCELGKQQRQPFPQNMSKRATHKLELIHSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQV 452          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A438HDV1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HDV1_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 3.670e-7
Identity = 27/72 (37.50%), Postives = 36/72 (50.00%), Query Frame = 1
Query:   10 QPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            Q CE C   K  R P  ++   R+   L  +  D+ G     S   N Y  +F DD+SRMTW YFL+ K +V
Sbjct:  378 QTCESCELGKQQRQPFPQNMSKRATHNLELIHSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQV 449          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A438HU89_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HU89_VITVI)

HSP 1 Score: 55.5 bits (132), Expect = 3.700e-7
Identity = 27/72 (37.50%), Postives = 37/72 (51.39%), Query Frame = 1
Query:   10 QPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            Q CE C   K  R P  ++   ++  KL  +  D+ G     S   N Y  +F DD+SRMTW YFL+ K +V
Sbjct:  437 QTCESCELGKQQRQPFPQNMSKKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQV 508          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A2I0VS12_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VS12_9ASPA)

HSP 1 Score: 55.5 bits (132), Expect = 3.710e-7
Identity = 28/73 (38.36%), Postives = 41/73 (56.16%), Query Frame = 1
Query:    7 LQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDEV 225
            +  C  C + KG + P ++S+   ++  L  V  D+ G +PV SH G +Y +IF DD SR  W + LQ K EV
Sbjct:  477 VSTCTSCLSCKGHKLPFERSSSSTNFP-LELVHSDVWGPSPVPSHLGYNYYVIFVDDFSRFVWLFPLQSKHEV 548          
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Match: A0A5N6P2N6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P2N6_9ASTR)

HSP 1 Score: 55.1 bits (131), Expect = 5.050e-7
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   16 CERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGNHYAMIFRDDISRMTWEYFLQKKDE 222
            CE C   K  R P   S+  R+ E+L  +  DL G   V S G + Y ++F DD++RM+W YF+  K E
Sbjct:  444 CEACLTGKQSRLPFN-SSSWRAKERLELIHTDLCGPMQVPSLGNSLYYLLFVDDLTRMSWVYFIHSKKE 511          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107004.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A0V0HMV8_SOLCH3.270e-1044.29Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A4Y2DBF7_ARAVE5.220e-1045.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2BEM1_ARAVE1.560e-844.00Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C721A4D1.620e-842.67uncharacterized protein LOC110282542 n=1 Tax=Paras... [more]
A0A2I0KGW2_PUNGR3.980e-843.66gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A438E1L6_VITVI7.740e-838.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HDV1_VITVI3.670e-737.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HU89_VITVI3.700e-737.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0VS12_9ASPA3.710e-738.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6P2N6_9ASTR5.050e-739.13Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107004contigH-elongata_contig107004:685..909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929600.2803712-CDS-H-elongata_contig107004:684..9091622929600.2803712-CDS-H-elongata_contig107004:684..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107004 685..909 -
1691679086.557698-CDS-H-elongata_contig107004:684..9091691679086.557698-CDS-H-elongata_contig107004:684..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107004 685..909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107004.578.1prot_H-elongata_contig107004.578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107004 685..909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107004.578.1

>prot_H-elongata_contig107004.578.1 ID=prot_H-elongata_contig107004.578.1|Name=mRNA_H-elongata_contig107004.578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
GKLQPCERCSAAKGFRAPVKKSTDCRSYEKLGRVFVDLSGKTPVKSHGGN
HYAMIFRDDISRMTWEYFLQKKDEV
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mRNA from alignment at H-elongata_contig107004:685..909-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107004.578.1 ID=mRNA_H-elongata_contig107004.578.1|Name=mRNA_H-elongata_contig107004.578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig107004:685..909- (Himanthalia elongata Himel1 dioecious)
GGCAAGCTGCAGCCATGCGAGAGGTGCTCAGCTGCGAAGGGGTTTCGTGC TCCAGTCAAGAAGTCTACCGACTGTAGATCATATGAGAAGTTGGGAAGAG TTTTTGTCGATCTGTCTGGCAAGACGCCAGTAAAATCTCACGGGGGGAAT CATTATGCGATGATTTTTCGTGATGACATTTCTCGGATGACTTGGGAATA TTTTCTGCAAAAGAAAGACGAAGTA
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Coding sequence (CDS) from alignment at H-elongata_contig107004:685..909-

>mRNA_H-elongata_contig107004.578.1 ID=mRNA_H-elongata_contig107004.578.1|Name=mRNA_H-elongata_contig107004.578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig107004:685..909- (Himanthalia elongata Himel1 dioecious)
GGCAAGCTGCAGCCATGCGAGAGGTGCTCAGCTGCGAAGGGGTTTCGTGC
TCCAGTCAAGAAGTCTACCGACTGTAGATCATATGAGAAGTTGGGAAGAG
TTTTTGTCGATCTGTCTGGCAAGACGCCAGTAAAATCTCACGGGGGGAAT
CATTATGCGATGATTTTTCGTGATGACATTTCTCGGATGACTTGGGAATA
TTTTCTGCAAAAGAAAGACGAAGTAGGCAAGCTGCAGCCATGCGAGAGGT
GCTCAGCTGCGAAGGGGTTTCGTGCTCCAGTCAAGAAGTCTACCGACTGT
AGATCATATGAGAAGTTGGGAAGAGTTTTTGTCGATCTGTCTGGCAAGAC
GCCAGTAAAATCTCACGGGGGGAATCATTATGCGATGATTTTTCGTGATG
ACATTTCTCGGATGACTTGGGAATATTTTCTGCAAAAGAAAGACGAAGTA
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