prot_H-elongata_contig202930.5755.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig202930.5755.1
Unique Name	prot_H-elongata_contig202930.5755.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	63

Homology

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BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.970e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0

Query:    1 DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVL-ENMQGAGVSPDKFCSNMAIR 62
            DQALSWVDAA++ GL  T  +F   I A   GG W+R+L VL E+M   GV PDKFC NMA+R
Sbjct:  445 DQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALR 507

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BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.780e-9
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 0

Query:    1 DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVL-ENMQGAGVSPDKFCSNMAIR 62
            DQALSWVDAA++ GL  T  +F   I A   G  W+R+L V+ ++M    V PDKFC NMA+R
Sbjct:  351 DQALSWVDAAVDAGLELTASVFCAIIIAFGRGREWRRSLSVVYDDMPAYEVDPDKFCYNMALR 413

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot

BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KYW8_9PHAE	3.970e-12	57.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G393_ECTSI	3.780e-9	50.79	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..62 e-value: 1.8E-8 score: 35.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 26..53 e-value: 8.5E-4 score: 17.3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig202930	contig	H-elongata_contig202930:830..1018 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig202930.5755.1	mRNA_H-elongata_contig202930.5755.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig202930 830..1018 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig202930.5755.1 ID=prot_H-elongata_contig202930.5755.1|Name=mRNA_H-elongata_contig202930.5755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVLENMQGAGV
SPDKFCSNMAIR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat