mRNA_H-elongata_contig202930.5755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202930.5755.1
Unique NamemRNA_H-elongata_contig202930.5755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.970e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVL-ENMQGAGVSPDKFCSNMAIR 186
            DQALSWVDAA++ GL  T  +F   I A   GG W+R+L VL E+M   GV PDKFC NMA+R
Sbjct:  445 DQALSWVDAAVDAGLELTASVFCAIIIAFGRGGEWRRSLSVLYEDMPAYGVDPDKFCYNMALR 507
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BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.780e-9
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVL-ENMQGAGVSPDKFCSNMAIR 186
            DQALSWVDAA++ GL  T  +F   I A   G  W+R+L V+ ++M    V PDKFC NMA+R
Sbjct:  351 DQALSWVDAAVDAGLELTASVFCAIIIAFGRGREWRRSLSVVYDDMPAYEVDPDKFCYNMALR 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202930.5755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYW8_9PHAE3.970e-1257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G393_ECTSI3.780e-950.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202930contigH-elongata_contig202930:830..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7G393
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.8760338-CDS-H-elongata_contig202930:829..10181622930140.8760338-CDS-H-elongata_contig202930:829..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202930 830..1018 -
1691679296.65496-CDS-H-elongata_contig202930:829..10181691679296.65496-CDS-H-elongata_contig202930:829..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202930 830..1018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202930.5755.1prot_H-elongata_contig202930.5755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202930 830..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202930.5755.1

>prot_H-elongata_contig202930.5755.1 ID=prot_H-elongata_contig202930.5755.1|Name=mRNA_H-elongata_contig202930.5755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
DQALSWVDAAIEQGLTPTVGLFYEAIAACVMGGVWQRALGVLENMQGAGV
SPDKFCSNMAIR*
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mRNA from alignment at H-elongata_contig202930:830..1018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202930.5755.1 ID=mRNA_H-elongata_contig202930.5755.1|Name=mRNA_H-elongata_contig202930.5755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig202930:830..1018- (Himanthalia elongata Himel1 dioecious)
GATCAAGCCCTCTCATGGGTTGACGCTGCCATCGAGCAGGGCCTGACCCC
GACGGTGGGTCTCTTCTACGAGGCGATCGCTGCCTGCGTCATGGGGGGCG
TGTGGCAGCGTGCACTGGGGGTCCTTGAAAATATGCAAGGTGCCGGGGTC
AGTCCTGACAAGTTCTGCAGCAACATGGCGATCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig202930:830..1018-

>mRNA_H-elongata_contig202930.5755.1 ID=mRNA_H-elongata_contig202930.5755.1|Name=mRNA_H-elongata_contig202930.5755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig202930:830..1018- (Himanthalia elongata Himel1 dioecious)
GATCAAGCCCTCTCATGGGTTGACGCTGCCATCGAGCAGGGCCTGACCCC
GACGGTGGGTCTCTTCTACGAGGCGATCGCTGCCTGCGTCATGGGGGGCG
TGTGGCAGCGTGCACTGGGGGTCCTTGAAAATATGCAAGGTGCCGGGGTC
AGTCCTGACAAGTTCTGCAGCAACATGGCGATCAGGTGAGATCAAGCCCT
CTCATGGGTTGACGCTGCCATCGAGCAGGGCCTGACCCCGACGGTGGGTC
TCTTCTACGAGGCGATCGCTGCCTGCGTCATGGGGGGCGTGTGGCAGCGT
GCACTGGGGGTCCTTGAAAATATGCAAGGTGCCGGGGTCAGTCCTGACAA
GTTCTGCAGCAACATGGCGATCAGGTGA
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