mRNA_H-elongata_contig202912.5753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202912.5753.1
Unique NamemRNA_H-elongata_contig202912.5753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A443RS47_9ACAR (Copia protein-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443RS47_9ACAR)

HSP 1 Score: 53.5 bits (127), Expect = 6.920e-8
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HID++YH +R+  EEG++  +HV SENQ AD+LTK
Sbjct:   75 RTKHIDVRYHFIREKQEEGIINILHVPSENQLADLLTK 112
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9GHM8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GHM8_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 9.190e-8
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct:  225 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 262
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9H1F2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H1F2_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct: 1297 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 1334
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9F8W6_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8W6_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct: 1122 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 1159
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9FVF7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FVF7_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct:  979 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 1016
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9GBT3_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBT3_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct:  553 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 590
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9HKN6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HKN6_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H++R+ ++ GL+RT+HVRSENQ AD++TK
Sbjct:  524 RTKHIELDCHLIREKIQNGLIRTLHVRSENQLADLMTK 561
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9IAT8_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IAT8_FAGSY)

HSP 1 Score: 53.9 bits (128), Expect = 2.580e-7
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H+VR+ +++GLVRT+HV S+NQ ADI+TK
Sbjct: 1108 RTKHIELDCHLVREKIQDGLVRTLHVTSQNQLADIMTK 1145
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9GPP9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GPP9_FAGSY)

HSP 1 Score: 53.9 bits (128), Expect = 2.580e-7
Identity = 22/38 (57.89%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L YH+VR+ +++GLVRT++V S+NQ AD++TK
Sbjct:  758 RTKHIELDYHLVREKIQDGLVRTLNVSSQNQLADLMTK 795
[Close]
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Match: A0A2N9EKJ4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EKJ4_FAGSY)

HSP 1 Score: 53.5 bits (127), Expect = 3.550e-7
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK 114
            RT+HI+L  H+VR+ ++EGLVRT+HV S+NQ AD++TK
Sbjct:  419 RTKHIELDCHLVREKIQEGLVRTLHVISQNQLADLMTK 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202912.5753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A443RS47_9ACAR6.920e-857.89Copia protein-like protein n=1 Tax=Leptotrombidium... [more]
A0A2N9GHM8_FAGSY9.190e-857.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9H1F2_FAGSY1.010e-757.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F8W6_FAGSY1.010e-757.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FVF7_FAGSY1.010e-757.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GBT3_FAGSY1.010e-757.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HKN6_FAGSY1.010e-757.89Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IAT8_FAGSY2.580e-760.53Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9GPP9_FAGSY2.580e-757.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EKJ4_FAGSY3.550e-760.53Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202912contigH-elongata_contig202912:270..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.7706227-CDS-H-elongata_contig202912:269..3831622930140.7706227-CDS-H-elongata_contig202912:269..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202912 270..383 -
1691679296.619834-CDS-H-elongata_contig202912:269..3831691679296.619834-CDS-H-elongata_contig202912:269..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202912 270..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202912.5753.1prot_H-elongata_contig202912.5753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202912 270..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202912.5753.1

>prot_H-elongata_contig202912.5753.1 ID=prot_H-elongata_contig202912.5753.1|Name=mRNA_H-elongata_contig202912.5753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
RTRHIDLKYHIVRDAVEEGLVRTVHVRSENQHADILTK
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mRNA from alignment at H-elongata_contig202912:270..383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202912.5753.1 ID=mRNA_H-elongata_contig202912.5753.1|Name=mRNA_H-elongata_contig202912.5753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig202912:270..383- (Himanthalia elongata Himel1 dioecious)
AGAACACGCCATATCGACCTCAAGTACCACATTGTTCGAGACGCCGTCGA
AGAGGGATTGGTCCGCACTGTTCATGTTAGGAGTGAGAATCAGCATGCGG
ACATTCTCACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig202912:270..383-

>mRNA_H-elongata_contig202912.5753.1 ID=mRNA_H-elongata_contig202912.5753.1|Name=mRNA_H-elongata_contig202912.5753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig202912:270..383- (Himanthalia elongata Himel1 dioecious)
AGAACACGCCATATCGACCTCAAGTACCACATTGTTCGAGACGCCGTCGA
AGAGGGATTGGTCCGCACTGTTCATGTTAGGAGTGAGAATCAGCATGCGG
ACATTCTCACGAAGAGAACACGCCATATCGACCTCAAGTACCACATTGTT
CGAGACGCCGTCGAAGAGGGATTGGTCCGCACTGTTCATGTTAGGAGTGA
GAATCAGCATGCGGACATTCTCACGAAG
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