mRNA_H-elongata_contig202854.5751.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A6H5JXE9_9PHAE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22 Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query: 4 RKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
R LS QRYV+ GGTEPPF+GR N Y +KR+G + CA C+LPAYSS KF+SGTGWPSF++
Sbjct: 39 RSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYE 102
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: D7FIE9_ECTSI (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query: 4 RKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
R LS QRYV+ GGTEPPF+GR N Y +KR+G ++CA C+LPAYSS KF+SGTGWPSF++
Sbjct: 40 RALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 103
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A7C2ZGN0_9BACT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C2ZGN0_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 1.390e-14 Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
K++L+ Q YV GGTEPPFTG+ N K+ G+Y C C P + SK KFDSGTGWPSF++
Sbjct: 13 KKRLTPEQYYVSREGGTEPPFTGKYWNC-----KKPGIYRCVCCGEPLFDSKTKFDSGTGWPSFYQ 73
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A3D1MAV8_9BACT (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A3D1MAV8_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 1.560e-14 Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 KRKLSKLQRYVM-GGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFF 192
K LS QR VM GG TE PFTG + Y +K KGVYHCAAC P + S K+DSG+GWPSF+
Sbjct: 8 KSSLSSFQREVMCGGATEAPFTG----AYLY-NKDKGVYHCAACNHPLFDSDTKYDSGSGWPSFY 67
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: D7E729_METEZ (Peptide methionine sulfoxide reductase MsrB n=2 Tax=Methanohalobium evestigatum TaxID=2322 RepID=D7E729_METEZ) HSP 1 Score: 71.6 bits (174), Expect = 1.870e-14 Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 KRKLSKLQRYVMGG-GTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFF 192
K++L+ Q YV+ GTEPPFTG+ Y++KRKG+Y CA C +SS+ K+DSGTGWPSF+
Sbjct: 12 KKELTPEQYYVLREKGTEPPFTGKY-----YQNKRKGIYRCAGCGQELFSSETKYDSGTGWPSFW 71
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A2D8TZC4_9SYNE (Peptide-methionine (R)-S-oxide reductase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2D8TZC4_9SYNE) HSP 1 Score: 72.4 bits (176), Expect = 2.230e-14 Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 43 GTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
GTEPPFT N KR G YHCA C+ P +SSK KFDSGTGWPSFF+
Sbjct: 67 GTEPPFTSPLNN-----EKRNGTYHCAGCDQPLFSSKAKFDSGTGWPSFFE 112
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A6H3PXE0_9FLAO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Olleya aquimaris TaxID=639310 RepID=A0A6H3PXE0_9FLAO) HSP 1 Score: 72.0 bits (175), Expect = 2.660e-14 Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSF 189
K +LS + YV+ GTE PF+ N KR GVYHCAAC+ P + S+DKFDSGTGWPSF
Sbjct: 41 KTELSDKEYYVLRKAGTERPFSSSLNN-----EKRAGVYHCAACDTPLFKSEDKFDSGTGWPSF 99
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A1M5TGM3_9FLAO (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Winogradskyella TaxID=286104 RepID=A0A1M5TGM3_9FLAO) HSP 1 Score: 71.6 bits (174), Expect = 3.600e-14 Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
K +LS ++ YV+ GTE PFT K KGVYHCAAC P + S+ KFDSGTGWPSF+K
Sbjct: 40 KAELSDMEYYVLREAGTERPFTSPLN-----KKYEKGVYHCAACNTPLFKSETKFDSGTGWPSFYK 100
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A061QZ54_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZ54_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 3.630e-14 Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 10 LSKLQRYV-MGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
LS+ QR V + TEP FTG T N +P+ SK++G Y A LP +SS+ KFDSGTGWPSF+K
Sbjct: 102 LSRFQRQVVLNSATEPAFTGLTVNGYPHDSKQRGTYVSALGGLPLFSSEAKFDSGTGWPSFYK 164
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A250X2R7_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2R7_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 4.280e-14 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 4 RKLSKLQRYV-MGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
+ L + RYV + GTE P+TG+T N PY SK KGVY A LP +SS+ KF+SGTGWPSFF+
Sbjct: 109 KNLPGISRYVALEHGTERPYTGQTVNGVPYDSKEKGVYVSALGGLPLFSSEAKFESGTGWPSFFE 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig202854.5751.1 >prot_H-elongata_contig202854.5751.1 ID=prot_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp KRKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSback to top mRNA from alignment at H-elongata_contig202854:596..790- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig202854.5751.1 ID=mRNA_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig202854:596..790- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig202854:596..790- >mRNA_H-elongata_contig202854.5751.1 ID=mRNA_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig202854:596..790- (Himanthalia elongata Himel1 dioecious)back to top |