mRNA_H-elongata_contig202854.5751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202854.5751.1
Unique NamemRNA_H-elongata_contig202854.5751.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A6H5JXE9_9PHAE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 RKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            R LS  QRYV+ GGTEPPF+GR  N   Y +KR+G + CA C+LPAYSS  KF+SGTGWPSF++
Sbjct:   39 RSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYE 102          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: D7FIE9_ECTSI (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 RKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            R LS  QRYV+ GGTEPPF+GR  N   Y +KR+G ++CA C+LPAYSS  KF+SGTGWPSF++
Sbjct:   40 RALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 103          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A7C2ZGN0_9BACT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C2ZGN0_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-14
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            K++L+  Q YV   GGTEPPFTG+  N      K+ G+Y C  C  P + SK KFDSGTGWPSF++
Sbjct:   13 KKRLTPEQYYVSREGGTEPPFTGKYWNC-----KKPGIYRCVCCGEPLFDSKTKFDSGTGWPSFYQ 73          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A3D1MAV8_9BACT (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A3D1MAV8_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.560e-14
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 KRKLSKLQRYVM-GGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFF 192
            K  LS  QR VM GG TE PFTG     + Y +K KGVYHCAAC  P + S  K+DSG+GWPSF+
Sbjct:    8 KSSLSSFQREVMCGGATEAPFTG----AYLY-NKDKGVYHCAACNHPLFDSDTKYDSGSGWPSFY 67          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: D7E729_METEZ (Peptide methionine sulfoxide reductase MsrB n=2 Tax=Methanohalobium evestigatum TaxID=2322 RepID=D7E729_METEZ)

HSP 1 Score: 71.6 bits (174), Expect = 1.870e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 KRKLSKLQRYVMGG-GTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFF 192
            K++L+  Q YV+   GTEPPFTG+      Y++KRKG+Y CA C    +SS+ K+DSGTGWPSF+
Sbjct:   12 KKELTPEQYYVLREKGTEPPFTGKY-----YQNKRKGIYRCAGCGQELFSSETKYDSGTGWPSFW 71          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A2D8TZC4_9SYNE (Peptide-methionine (R)-S-oxide reductase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2D8TZC4_9SYNE)

HSP 1 Score: 72.4 bits (176), Expect = 2.230e-14
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   43 GTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            GTEPPFT    N      KR G YHCA C+ P +SSK KFDSGTGWPSFF+
Sbjct:   67 GTEPPFTSPLNN-----EKRNGTYHCAGCDQPLFSSKAKFDSGTGWPSFFE 112          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A6H3PXE0_9FLAO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Olleya aquimaris TaxID=639310 RepID=A0A6H3PXE0_9FLAO)

HSP 1 Score: 72.0 bits (175), Expect = 2.660e-14
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSF 189
            K +LS  + YV+   GTE PF+    N      KR GVYHCAAC+ P + S+DKFDSGTGWPSF
Sbjct:   41 KTELSDKEYYVLRKAGTERPFSSSLNN-----EKRAGVYHCAACDTPLFKSEDKFDSGTGWPSF 99          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A1M5TGM3_9FLAO (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Winogradskyella TaxID=286104 RepID=A0A1M5TGM3_9FLAO)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 KRKLSKLQRYVMG-GGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            K +LS ++ YV+   GTE PFT         K   KGVYHCAAC  P + S+ KFDSGTGWPSF+K
Sbjct:   40 KAELSDMEYYVLREAGTERPFTSPLN-----KKYEKGVYHCAACNTPLFKSETKFDSGTGWPSFYK 100          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A061QZ54_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZ54_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 3.630e-14
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 LSKLQRYV-MGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            LS+ QR V +   TEP FTG T N +P+ SK++G Y  A   LP +SS+ KFDSGTGWPSF+K
Sbjct:  102 LSRFQRQVVLNSATEPAFTGLTVNGYPHDSKQRGTYVSALGGLPLFSSEAKFDSGTGWPSFYK 164          
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Match: A0A250X2R7_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2R7_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 4.280e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    4 RKLSKLQRYV-MGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSSKDKFDSGTGWPSFFK 195
            + L  + RYV +  GTE P+TG+T N  PY SK KGVY  A   LP +SS+ KF+SGTGWPSFF+
Sbjct:  109 KNLPGISRYVALEHGTERPYTGQTVNGVPYDSKEKGVYVSALGGLPLFSSEAKFESGTGWPSFFE 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202854.5751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE9_9PHAE1.120e-2262.50Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
D7FIE9_ECTSI1.120e-2262.50Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
A0A7C2ZGN0_9BACT1.390e-1451.52Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
A0A3D1MAV8_9BACT1.560e-1456.92Peptide-methionine (R)-S-oxide reductase n=2 Tax=B... [more]
D7E729_METEZ1.870e-1452.31Peptide methionine sulfoxide reductase MsrB n=2 Ta... [more]
A0A2D8TZC4_9SYNE2.230e-1462.75Peptide-methionine (R)-S-oxide reductase n=3 Tax=u... [more]
A0A6H3PXE0_9FLAO2.660e-1454.69Peptide-methionine (R)-S-oxide reductase n=1 Tax=O... [more]
A0A1M5TGM3_9FLAO3.600e-1453.03Peptide-methionine (R)-S-oxide reductase n=2 Tax=W... [more]
A0A061QZ54_9CHLO3.630e-1455.56Peptide-methionine (R)-S-oxide reductase n=1 Tax=T... [more]
A0A250X2R7_9CHLO4.280e-1455.38Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202854contigH-elongata_contig202854:596..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.7e-18
Seed eggNOG ortholog2880.D7FIE9
KEGG koko:K07305
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0033554,GO:0033743,GO:0034599,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.6297395-CDS-H-elongata_contig202854:595..7901622930140.6297395-CDS-H-elongata_contig202854:595..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202854 596..790 -
1691679296.561051-CDS-H-elongata_contig202854:595..7901691679296.561051-CDS-H-elongata_contig202854:595..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202854 596..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202854.5751.1prot_H-elongata_contig202854.5751.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202854 596..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202854.5751.1

>prot_H-elongata_contig202854.5751.1 ID=prot_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
KRKLSKLQRYVMGGGTEPPFTGRTGNIFPYKSKRKGVYHCAACELPAYSS
KDKFDSGTGWPSFFK
back to top

mRNA from alignment at H-elongata_contig202854:596..790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202854.5751.1 ID=mRNA_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig202854:596..790- (Himanthalia elongata Himel1 dioecious)
AAGAGAAAGCTAAGCAAGCTCCAGCGGTACGTCATGGGTGGTGGGACAGA GCCGCCCTTCACTGGCCGAACAGGGAACATATTTCCATACAAAAGCAAGA GGAAGGGGGTCTATCACTGTGCTGCATGTGAGCTTCCGGCGTATTCTTCG AAAGACAAGTTCGACAGCGGAACCGGGTGGCCCAGTTTCTTCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig202854:596..790-

>mRNA_H-elongata_contig202854.5751.1 ID=mRNA_H-elongata_contig202854.5751.1|Name=mRNA_H-elongata_contig202854.5751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig202854:596..790- (Himanthalia elongata Himel1 dioecious)
AAGAGAAAGCTAAGCAAGCTCCAGCGGTACGTCATGGGTGGTGGGACAGA
GCCGCCCTTCACTGGCCGAACAGGGAACATATTTCCATACAAAAGCAAGA
GGAAGGGGGTCTATCACTGTGCTGCATGTGAGCTTCCGGCGTATTCTTCG
AAAGACAAGTTCGACAGCGGAACCGGGTGGCCCAGTTTCTTCAAGAAGAG
AAAGCTAAGCAAGCTCCAGCGGTACGTCATGGGTGGTGGGACAGAGCCGC
CCTTCACTGGCCGAACAGGGAACATATTTCCATACAAAAGCAAGAGGAAG
GGGGTCTATCACTGTGCTGCATGTGAGCTTCCGGCGTATTCTTCGAAAGA
CAAGTTCGACAGCGGAACCGGGTGGCCCAGTTTCTTCAAG
back to top