mRNA_H-elongata_contig20280.5750.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: D8LJA7_ECTSI (PITH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA7_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.310e-34 Identity = 85/106 (80.19%), Postives = 91/106 (85.85%), Query Frame = 1
Query: 4 ACRHDHEEAGXXXXXXXXXXXXXXXXXXXX---EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
+CRHDHEEAGXXXXXXXXXXXXXXXXXXXX EDP GMSL+GLIDTTR VRCLNESAPGS LNCLKPWD+RRDPQPRLESEE+DPEL+I+VPFTQV
Sbjct: 3 SCRHDHEEAGXXXXXXXXXXXXXXXXXXXXXDPEDPDGMSLFGLIDTTR----------VRCLNESAPGSGLNCLKPWDKRRDPQPRLESEEDDPELIIYVPFTQV 98
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A835ZD87_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD87_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.080e-23 Identity = 64/103 (62.14%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 4 ACRHDHEEAGXXXXXXXXXXXXXXXXXXXXEDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
ACR +HE G XXXXXXXXXXX EDP G SLYGLIDTTR VRCLNESA G L CLKPWD+RR+P+P LES + DPEL+I VPFT+V
Sbjct: 3 ACRGEHEGCGGGHDHSXXXXXXXXXXXDI-EDPTGQSLYGLIDTTR----------VRCLNESAVGQVLQCLKPWDKRREPEPFLESNDGDPELLIHVPFTEV 94
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: W7UAE5_9STRA (PITH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAE5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.540e-14 Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 1 MACRHDHEEAGXXXXXXXXXXXXXXXXXXXXEDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
M+CR DH ++ EDP G S++ IDT++ VRCLNE+ G+ L+ K +++RR+P+PRL+S ++DPEL++FVPFT++
Sbjct: 1 MSCRGDHIDS----CGHGHDHAHGEECDHEAEDPDGQSMFAAIDTSK----------VRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRI 90
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S0QYR0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYR0_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 3.270e-10 Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRR--RDPQPRLESEENDPELVIFVPFT 306
E+ GG SL+G IDTT+ V LN S P S N +PWD+R RD +P L S+E+DPEL+IF+PFT
Sbjct: 16 ENCGGTSLHGYIDTTK----------VTVLNASNPDSLKNVFRPWDQRLARDVEP-LNSDEDDPELLIFIPFT 77
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S3PG12_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PG12_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.190e-10 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
ED G SLY ID + V C+NE G A N +KPW++R++ P LESEE+D EL++ +PFT
Sbjct: 37 EDGSGNSLYQWIDKDK----------VSCMNEKESGMAKNIIKPWEQRKEYLPILESEEDDAELLLHIPFT 97
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A2D4BK70_PYTIN (PITH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK70_PYTIN) HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9 Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 1 MACRHDHEEAGXXXXXXXXXXXXXXXXXXXX-EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQ 309
M C+ +H+E G XXXXXXXXXXXXXXXXX EDP G SL+ IDT++ +R LN + P + KPW R D L S E+DPEL+IF+PFT+
Sbjct: 1 MQCQREHDECGGHXXXXXXXXXXXXXXXXXEPEDPSGDSLFPYIDTSK----------LRALNAAEPDHVAHPFKPWHERSDRSRYLSSNEDDPELIIFIPFTE 94
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A1Y2F5B0_PROLT (Galactose-binding domain-like protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F5B0_PROLT) HSP 1 Score: 62.4 bits (150), Expect = 1.530e-9 Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 172 VRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPF 303
VRCLNE +PGSA + ++PWD+R D P L+SEE+D +L++ VPF
Sbjct: 43 VRCLNEQSPGSARHIIRPWDKRWDTNPSLQSEEDDAQLLLHVPF 86
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S3PG51_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PG51_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.280e-9 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
ED G SLY ID + V C+NE G A N +KPW++R++ P LESEE+D EL++ +PFT
Sbjct: 37 EDGSGNSLYQWIDKDK----------VSCMNEKESGMAKNIIKPWEQRKEYLPILESEEDDAELLLHIPFT 97
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S4HIT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HIT9_9EUKA) HSP 1 Score: 60.8 bits (146), Expect = 5.500e-9 Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 106 GMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
G SLY I+T +V CLNES PGS NC KP+ R LES E+D +L++++PFT
Sbjct: 33 GWSLYQYINT----------ESVTCLNESVPGSVKNCFKPYSERASTDKYLESNEDDEQLILYIPFT 89
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A5A8CDQ3_CAFRO (PITH domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CDQ3_CAFRO) HSP 1 Score: 59.7 bits (143), Expect = 1.340e-8 Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 97 DPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
D GG SL+G ID + V NE+ G+A+ LKPW RRR+ P + S+++DPEL+I +PFT
Sbjct: 21 DAGGDSLFGSIDREK----------VFAYNEAKAGAAVRALKPWARRREAVPFVLSDDDDPELIIHIPFT 80 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20280.5750.1 >prot_H-elongata_contig20280.5750.1 ID=prot_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MACRHDHEEAGGGGDGHDHSHGHGHDHSHDHEDPGGMSLYGLIDTTRRVPback to top mRNA from alignment at H-elongata_contig20280:5554..6745+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20280.5750.1 ID=mRNA_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig20280:5554..6745+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20280:5554..6745+ >mRNA_H-elongata_contig20280.5750.1 ID=mRNA_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig20280:5554..6745+ (Himanthalia elongata Himel1 dioecious)back to top |