mRNA_H-elongata_contig20257.5738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20257.5738.1
Unique NamemRNA_H-elongata_contig20257.5738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5KBT7_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT7_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.610e-46
Identity = 116/256 (45.31%), Postives = 153/256 (59.77%), Query Frame = 2 
Query: 2300 PRMLPPK-GIADAADTSENPLPGIANDKGALDAQTAAFSNLMRADIAQSLGVSLDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMSAWNDAGSRLHVGAMSGFIDFAQGAKVN--ILSQHLTQANPTTSHDDIGGMAFLAIFLYIACVAVAIPACSMSRSCCSRRKRNSLAVTNGAERAGVG-----IFRSGWRFPLGIWGERAGGRDEGSDDYHQEMTPLTEG-AENAERAERERSKV 3040
            PR+LPP  G  +  D    P   IA    ALD Q AAFS L+R+D+ Q+LGVS++ V + GV+PAGE   DW  W +W  G LNVS+V+ S+ P  TG RL+SAWN+  SRLH G ++G IDF++GAKV   +LS         T+ +D  G   LA FLY+ C A+AIPAC +SR  CSRR++ +   +N    A  G     + R GWR P    G R GG  EG+D   QE+ PL  G  + AER+ RER++V
Sbjct:  305 PRVLPPSDGNTENGDVI--PSSRIA----ALDEQGAAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGTWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHAGTITGLIDFSRGAKVTAVVLSTAAFSRKGGTAANDFNGPTLLATFLYVMCFALAIPACGVSRRFCSRRRQGNSFSSNAGSSASSGARSDGVKRRGWRSPRRTGGPRGGGV-EGAD--LQEIVPLAAGEGDGAERSRRERTRV 551
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: D8LQG6_ECTSI (Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG6_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 9.810e-38
Identity = 94/192 (48.96%), Postives = 123/192 (64.06%), Query Frame = 2 
Query: 2300 PRMLPPKGIADAADTSENPLPGIANDKGALDAQTAAFSNLMRADIAQSLGVSLDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMSAWNDAGSRLHVGAMSGFIDFAQGAKVN--ILSQHLTQANPTTSHDDIGGMAFLAIFLYIACVAVAIPACSMSRSCCSRRKR-NSLAVTNG 2866
            PR+LPP G A+  DT   P   IA    ALD Q +AFS L+R+D+ Q+LGVS++ V + GV+PAGE   DW AW +W  G LNVS+V+ S+ P  TG RL+SAWN+  SRLH G ++G IDF++GA+V   +LS         T+  D  G   LA FLY+ C A+AIPAC MSR   SRR+R NS + + G
Sbjct:  782 PRVLPPDGNAENGDTI--PSSSIA----ALDEQGSAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGAWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHSGTITGLIDFSRGAEVTAVVLSTAAFSRKGGTAAADFKGPTLLATFLYVVCFALAIPACGMSRRFFSRRRRGNSFSSSAG 967
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5JD44_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD44_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.660e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLFQHL 826
            +V +K++  RPS +C+A  +L EEQ CGFR  R    M F    +Q +G+  +  L  +      +++   +D  +LW V+ R   P ++   IR   DGMR    +  G L    D+F V QG+R+GCV  P LF  L
Sbjct:   30 KVHIKIITNRPSAFCEANNILPEEQ-CGFRPGRSTVDMLFVVRRLQELGWRKK--LPRYMCFVDLNKANDSVDREMLWKVLARAAIPAKLIEVIRHFHDGMRARVRMDEGEL---SDWFFVTQGVRQGCVLSPQLFNIL 162
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5KPJ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.990e-11
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFF--CSVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLFQHLPRRGTDNR 850
            +V +K++  RPS +C+A  +L EEQ CGFR+ R    M F  C +Q +G   +  L  +      +++   +D  +LW V+ R   P ++   +R   DGMR    +  G L    D+F V QG+R+GCV    + Q L RRG   R
Sbjct:   77 KVPIKIITNRPSAFCEANNILPEEQ-CGFRSGRSTVDMLFVVCRLQELGRRKKRPL--YMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVMRQFYDGMRARVRMDDGEL---SDWFFVTQGVRQGCVN---VVQDLLRRGPRGR 214
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5JE46_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE46_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-9
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            ++L K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:   62 KILAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSMSPLLF 191
[Close]
BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5JFS8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.300e-9
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            ++L K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:  132 KILAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSMSPLLF 261
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.380e-8
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            +VL K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:   79 KVLAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSISPLLF 208
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.850e-8
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            +VL K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:  106 KVLAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSMSPLLF 235
[Close]
BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.350e-8
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            +VL K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:  274 KVLAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSMSPLLF 403
[Close]
BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.910e-8
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:  416 EVLLKVVARRPSNYCQAKELLREEQQCGFRTDRLITAMFFC--SVQPMGYLAEGSLAAFS*PSSTSRSTILIDHILLW*VMNRL*SPPQIAAFIR*SRDGMRDFCAIR*GRLF*FVDYFGVEQGLRRGCVPFPMLF 817
            +VL K +  R S +C+A E+L EEQ CGFR  R    M F    +Q +G      +  +       ++   +D  LLW V+ R   P ++ A IR    GMR       G L    D+F V QGLR+GC   P+LF
Sbjct:  603 KVLAKTITNRLSAFCEANEILPEEQ-CGFRPGRSTVCMLFVVRRLQELG--RRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGEL---SDWFPVTQGLRQGCSMSPLLF 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KBT7_9PHAE1.610e-4645.31EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
D8LQG6_ECTSI9.810e-3848.96Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JD44_9PHAE8.660e-1234.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPJ8_9PHAE2.990e-1134.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JE46_9PHAE1.310e-934.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFS8_9PHAE8.300e-934.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7X5_9PHAE2.380e-835.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE2.850e-835.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE3.350e-835.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE3.910e-835.29Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20257contigH-elongata_contig20257:271..5329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue2.4e-37
Seed eggNOG ortholog2880.D8LQG6
Preferred nameKEX1
KEGG koko:K01288,ko:K09645
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000324,GO:0000746,GO:0000747,GO:0001906,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0006915,GO:0007039,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008238,GO:0008277,GO:0009056,GO:0009057,GO:0009058,GO:0009405,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010515,GO:0010646,GO:0010648,GO:0010720,GO:0010969,GO:0012501,GO:0012505,GO:0016485,GO:0016787,GO:0017171,GO:0019538,GO:0019748,GO:0019835,GO:0019953,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0030447,GO:0030448,GO:0031135,GO:0031137,GO:0031138,GO:0031640,GO:0031984,GO:0034305,GO:0034641,GO:0035821,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043937,GO:0043938,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044364,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0044764,GO:0045595,GO:0045597,GO:0045744,GO:0046937,GO:0046938,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051603,GO:0051604,GO:0051704,GO:0051715,GO:0060238,GO:0060240,GO:0060284,GO:0065007,GO:0070008,GO:0070011,GO:0071704,GO:0075306,GO:0075307,GO:0090029,GO:0098791,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903664,GO:1903666,GO:2000241,GO:2000242
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.6
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons4
Model size3838
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20257.5738.1prot_H-elongata_contig20257.5738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20257 2601..4534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.0390444-UTR-H-elongata_contig20257:270..6841622930139.0390444-UTR-H-elongata_contig20257:270..684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 271..684 +
1691679295.8913922-UTR-H-elongata_contig20257:270..6841691679295.8913922-UTR-H-elongata_contig20257:270..684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 271..684 +
1622930139.0599985-UTR-H-elongata_contig20257:709..26001622930139.0599985-UTR-H-elongata_contig20257:709..2600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 710..2600 +
1691679295.9050496-UTR-H-elongata_contig20257:709..26001691679295.9050496-UTR-H-elongata_contig20257:709..2600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 710..2600 +
1622930139.1247814-UTR-H-elongata_contig20257:4534..53291622930139.1247814-UTR-H-elongata_contig20257:4534..5329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 4535..5329 +
1691679295.9409354-UTR-H-elongata_contig20257:4534..53291691679295.9409354-UTR-H-elongata_contig20257:4534..5329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20257 4535..5329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.07882-CDS-H-elongata_contig20257:2600..28431622930139.07882-CDS-H-elongata_contig20257:2600..2843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 2601..2843 +
1691679295.9129102-CDS-H-elongata_contig20257:2600..28431691679295.9129102-CDS-H-elongata_contig20257:2600..2843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 2601..2843 +
1622930139.0978136-CDS-H-elongata_contig20257:3257..33801622930139.0978136-CDS-H-elongata_contig20257:3257..3380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 3258..3380 +
1691679295.9239585-CDS-H-elongata_contig20257:3257..33801691679295.9239585-CDS-H-elongata_contig20257:3257..3380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 3258..3380 +
1622930139.1118548-CDS-H-elongata_contig20257:4162..45341622930139.1118548-CDS-H-elongata_contig20257:4162..4534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 4163..4534 +
1691679295.9332414-CDS-H-elongata_contig20257:4162..45341691679295.9332414-CDS-H-elongata_contig20257:4162..4534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20257 4163..4534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20257.5738.1

>prot_H-elongata_contig20257.5738.1 ID=prot_H-elongata_contig20257.5738.1|Name=mRNA_H-elongata_contig20257.5738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MLPPKGIADAADTSENPLPGIANDKGALDAQTAAFSNLMRADIAQSLGVS
LDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMS
AWNDAGSRLHVGAMSGFIDFAQGAKVNILSQHLTQANPTTSHDDIGGMAF
LAIFLYIACVAVAIPACSMSRSCCSRRKRNSLAVTNGAERAGVGIFRSGW
RFPLGIWGERAGGRDEGSDDYHQEMTPLTEGAENAERAERERSKV*
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mRNA from alignment at H-elongata_contig20257:271..5329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20257.5738.1 ID=mRNA_H-elongata_contig20257.5738.1|Name=mRNA_H-elongata_contig20257.5738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5059bp|location=Sequence derived from alignment at H-elongata_contig20257:271..5329+ (Himanthalia elongata Himel1 dioecious)
ATTGCTGGCTTGAACCCCCTCTCGTCCCATGATTGGACTATCTACGTCGG
AGGGTTATCTATACACGCCCTTTAGCATTTGGAGGGGAATTTATCTGTAC
ACGGGCGACAACCAGAAAAGATCGGCGCGACATTAAAAAAACAAATTGAC
TCGCGAAGAAAATGACGCGATCCCGTCGTGACTGAAGGCGATGGCAAGCG
CGAAAAGCAGGAGGGACCGGATGGTCTTACTTGTCCTTAGAACTGATCAG
GCTATCCTCGGACTACAGCAGTACCGGGCTATCCTCCGGGAGCTCCACCG
ACTGTTCACGCTTGTCTAACGCGAGGTGCCTGTCCTGCAGCATGGGAAGG
TCGTGGGCATCACCGCACTACTGTCACAAGAAGAACGATGTGACGGAGGG
CGGGAACTACCGAGGCATTTCACTTGTGTCTCCTGTGAGTGAGGTGCTTC
TGAAAGTAGTCGCTAGGAGGCCCAGCAATTACTGTCAAGCCAAGGAACTG
CTACGGGAGGAGCAACAGTGCGGGTTTCGCACGGATCGCTTGATCACGGC
CATGTTTTTTTGTAGCGTTCAACCTATGGGTTATCTGGCGGAAGGCAGCC
TTGCCGCTTTCTCTTAACCTTCATCGACGTCCAGGAGTACGATTCTAATC
GATCACATCCTTCTGTGGTAGGTAATGAACCGCCTTTAGTCACCGCCGCA
GATAGCAGCATTCATCCGATAGTCCCGCGATGGAATGCGAGATTTTTGCG
CCATCCGATGAGGGCGTTTGTTCTGATTCGTCGATTACTTTGGGGTGGAG
CAAGGACTACGACGAGGATGTGTGCCATTTCCAATGCTATTTCAGCACCT
TCCTCGCCGCGGTACTGATAATCGTTTTCCATAGATTTGCGAAATATATC
CGGGGTATCCTCGCTGTCCTCGTGCACTTGAAATGAAAGAACCGCCGACG
TCGAGGAGGTCCGAGTCTGTATTAGACGGAATATGCTCTTCGCGCCGTGC
AGGCCATGCTGCATGCTCCATGCTGTGTCCTATGCCATGTCGTTTCGCGA
TCGCCGCGGGGGATCGCAAAAAGGATCAAGGTCAATTGTGGGAATGTGCC
GGACATTCGCTCTGACCGTGTCCGAGAAGGAGGGGAGAGACCGCGTACAT
GCCCCTCACCGCGTGCACCGCGGACGAGGATGCTGAAAAATACACTTGCC
TTGGAGAGAGGGGGCGCCATTGCTCGATGCCATTAAATCTCCTCCGCAGA
GATCAGCAGGTGAACTCGCGCGTGCCGGATGGACATCAAGCGGTATACCT
GCCTACACGAGCTGTACGACTGGCCGAAGTGGACGCTCTCTTGGCAAAAC
CTGACGGCAGAAATCGAAGCAATCGAGGCCCTCCTGTACGGATGCAAGAT
GTGGATTATCCGCCGGGGCCACTATAGCAGCAAGCTCCACACCCACGCAT
CCTCATCATCGAGGCACCATGCCAGACACCACACCACGATACCATCTGTT
TTACGACCGCGCGCTCGAGTAGGAGAATTCAAGAGACAACCGTTCGTACC
AGGAGACATTTGTGGACGGGGACGCTCATCCGCTCGAGCGATCGACGGTT
GCCCAAGCGAATCGTGTTCGGGACTTGTTAGTCTAGGCTTATCAAGGGGT
TAGGGGGTACAGCAGGATTAATGATGCGGAGGAGGAAATCGAAAAAGTGG
GTTGATTACGCGGAGATCGACGACGTTCGAGCGTTTGGTATTCCGAGTAG
TAATAGTAGCTGGAGACAGCCATGGGCGGGCGTTAGAGGCAAGGTTGGAA
AGGTTGGCAAGGTTAGAGGCAAGGGGTTGGGTTTGGAGCGCGGTGGGGGG
CCGGAGAAAGGTTTTGACTTCGTGGAGAATATGGGAGCAAAACGTGGCGA
TAACCTGCCAAGAGAAGAGAGGGGTCAATGTTTTTACCGCGCCGGGTGGT
GTAGCACCCTCGAAGCGACGCCTCTTCATATAGAAACCCGTCCGAAGGAA
CCTTTTACGGGCACTAGACGAACATGACGAAGACATGTGAGGCATAGTAT
ATAGGCAGCACGTCACTGTGTAATGCAGCGTTAAACTCGACGTCTCTTAT
CGTTTATTTTTCTGCCCATGTCAGCAGAGACATCCCTTCGTTTATATATA
CTTTTTGTATTTGTATTTGTACTTTAAAGTTTTCATTTTCTTTCTTTTGT
AGGTACAGTACGCTGCTAAACGGGTACAAAAACCCGCGTCTACCACGCCT
CGTCGTGCCGGCCTCATTTCAAGCCACTAGCCGCTTTCACCCCGCTCCGC
TTCGTCACGCTTCGCAACTCTTAGCCACGGATGCTTCCTCCCAAAGGAAT
CGCCGATGCCGCGGATACCAGCGAGAATCCATTACCGGGCATCGCGAACG
ACAAGGGCGCCCTCGACGCGCAAACGGCGGCGTTTTCTAACCTCATGAGG
GCGGACATAGCACAATCGCTGGGGGTTTCCCTCGATGCCGTGATGCTGGC
AGGCGTTTCTCCCGCGGGAGAAGCGGATGCCGATTGGCGCGCGTGGCGCC
GGTGGGCGGAGGGGAAACTGAACGTGAGTAGCTGGGTTTCAAAGACGACA
AACATAGTTGGGGGATCCTTACCGTAGGTCTTCGCGTGTGTTCTGCGGTG
GTTTGCGAGCGTTTCGGCCGTTTGAGTCTAGACCTCGTTTCGATGGTGCG
CGACGGCCTCGGCTACCTTTCTACCGCCATCGCCTCCCGGAAACAATTCC
GTAGAACGTCTTGGCTCCATTTGTTTGTATCCGCCGTGAGAGCCCGTGAT
TTGAGCCCCCCCCTTCCCCTACCAAGACATCGACGGCTTGAAAAAGTTGT
CGGTGGCATTCCGTGTGATCATGCAGCGCATGATTTATAGCTACGCGGAG
GTAAGTGACAAACGGCGAAGCGGCTGTTCCGCTGCCGCCGCCGCAAACAA
GTAACGCATTTTTTTTTTGTGTGTCGCGCGGGGACAGGTGTCCTTAGTTA
TCAAAAGCGAGGAGCCCAGCGTCACCGGGAATCGACTAATGTCCGCCTGG
AACGATGCTGGTTCTCGGCTGCATGTCGGCGCGATGTCGGGATTCATCGA
TTTCGCCCAGGTCTGAAGTGTGAAAGCTACTAAGCACTGTACAGTGCAGT
GAGATTCAATCACCGAATCAGGGCGAACGCCTTCACGTAGGTGTACGGTA
TAACCATCAACGAAGTAGAATTGGATGCACGATACATATATGGAGGCGTT
TATGGTCGGTACAAATATTAATATTACAATTCAAAAGATCAACCCTCATG
GTATTTTTTGGAGCGACTTTTTCGACAGGACAAAACCTCAAATGCCCCCC
CCCCCCCTCATTCCCTCTGGTGAACTAAGGCCAACTTTTGGGGCGGTGAA
GCGCGCGCCCGAGGAGATATTTTTAAATTTAACGTGTCGAAAGGGGAGGG
GGGGGGGTACATAACTATTCATAGCGCTAAATATTTTCGAGAAATCTTCG
TAGAAAGAGTATCCTGCTATGTAATGTTTTACGAGGGCTCGGACGCGTGG
TATAAGTTTTGTGGTGAAGGCAAAATATTGATCCCGCCGATCGTTGAGCG
ACGAGCCTTTGGAGTTAATGGGTTGTTGCGCGATGAAGTACATTCTCTCT
ACGATATTTCCGAAGAGTGTCAGCCGGCGGCGGCTTTTCAGTACGGCACC
AATAGTGACACTTCCCATTGTTGGATTTTGAAAGGGATAGAGAGGAGCAC
TTCTAGAGCTTTCGAGCCGAAGACACTATTTTTAGTGCACCACCATCAAC
GATTATGTATCTCGTAATGCGCCCCTGTTGACCTGGAAAATATCCCCCCC
CCCTCCCCCTAAACCCACACTCACGCCGTCCCGCCGGAACAGGGGGCCAA
GGTGAACATACTCTCCCAGCACCTGACGCAGGCAAACCCGACGACGAGCC
ACGACGATATAGGAGGCATGGCCTTCCTGGCAATCTTCCTCTACATCGCC
TGTGTCGCGGTGGCGATACCAGCTTGTAGTATGTCGCGAAGCTGTTGTTC
GCGCCGGAAACGCAACAGCCTGGCAGTTACCAACGGCGCAGAGAGAGCAG
GCGTAGGGATTTTTAGATCGGGGTGGCGTTTTCCGCTAGGGATTTGGGGG
GAGAGGGCTGGGGGTAGAGATGAGGGGTCGGACGATTATCACCAGGAGAT
GACGCCGTTGACTGAGGGAGCAGAGAACGCGGAACGAGCAGAGAGAGAGC
GATCGAAAGTTTAGCGATATTTTTATTTTTGACGGCGAAAGGCTTTCGTG
AGAAGGTGAAAGCCTTGATCAGTAGGGTTAGAGTTCTAGGAATGTATGGT
TACATGGTTACCCAATGTTCTCAGAATTTCGTAAGTGCAAGAGGCTCTCA
ATGGTTCGAGACGTGATTAAATCCCTTCGTTTTGTATACAGAACAGATAT
AATTCCCACAATTGGTTGTAGACATCGTAAAAACCAGGGTTCCTTGTTGT
TGGTCACACATTTAGCAGGAGATCAACCGGATTTGGTTGCCTTCTGCTCG
TGGTCAGCTGAACAGGGAAAAATAATTTTCCCCTGCCCCCGTAGAGACTC
GGTAAAAGCAGATCTTCGGGTCTTCTGCCTTGATAAGCTTGTTGGAGACA
CCAATAACCGTCTCATGCGTGTTGATGAGTTTTGTGAAGCATGGAAAGAT
GGGAATAGCTGGACTGCAAACAGGTTATTCGTGTAGTAGGCCCAAACCTG
ACTCAGGGAAGACAAATCGGCTCTAATATGGACCCGTTCGGCGGCATCAG
CTGTGAAAGGCGGGTGCGGATGAAATATTTATATGAATATAGTATATAGG
CATATTACGTACTTCGGGATTTGCGTTTTCAGAAACAGTGTACTCTCACT
TGTGTCTTATTGGATACTGGTAAAGGTCTGTTGTCCGCATTTTTTGAGCT
GGTGACGTCATGTAATTATCTCAAAATGTTTGATCGTTTGTGTGTGTTTT
CAGACTACTCTGCTGAGCCATGGAAATGCTCCAGCCCACCGATCATCCAC
ATCTTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig20257:271..5329+

>mRNA_H-elongata_contig20257.5738.1 ID=mRNA_H-elongata_contig20257.5738.1|Name=mRNA_H-elongata_contig20257.5738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig20257:271..5329+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCTCCCAAAGGAATCGCCGATGCCGCGGATACCAGCGAGAATCC
ATTACCGGGCATCGCGAACGACAAGGGCGCCCTCGACGCGCAAACGGCGG
CGTTTTCTAACCTCATGAGGGCGGACATAGCACAATCGCTGGGGGTTTCC
CTCGATGCCGTGATGCTGGCAGGCGTTTCTCCCGCGGGAGAAGCGGATGC
CGATTGGCGCGCGTGGCGCCGGTGGGCGGAGGGGAAACTGAACATGCTTC
CTCCCAAAGGAATCGCCGATGCCGCGGATACCAGCGAGAATCCATTACCG
GGCATCGCGAACGACAAGGGCGCCCTCGACGCGCAAACGGCGGCGTTTTC
TAACCTCATGAGGGCGGACATAGCACAATCGCTGGGGGTTTCCCTCGATG
CCGTGATGCTGGCAGGCGTTTCTCCCGCGGGAGAAGCGGATGCCGATTGG
CGCGCGTGGCGCCGGTGGGCGGAGGGGAAACTGAACGTGTCCTTAGTTAT
CAAAAGCGAGGAGCCCAGCGTCACCGGGAATCGACTAATGTCCGCCTGGA
ACGATGCTGGTTCTCGGCTGCATGTCGGCGCGATGTCGGGATTCATCGAT
TTCGCCCAGGTGTCCTTAGTTATCAAAAGCGAGGAGCCCAGCGTCACCGG
GAATCGACTAATGTCCGCCTGGAACGATGCTGGTTCTCGGCTGCATGTCG
GCGCGATGTCGGGATTCATCGATTTCGCCCAGGGGGCCAAGGTGAACATA
CTCTCCCAGCACCTGACGCAGGCAAACCCGACGACGAGCCACGACGATAT
AGGAGGCATGGCCTTCCTGGCAATCTTCCTCTACATCGCCTGTGTCGCGG
TGGCGATACCAGCTTGTAGTATGTCGCGAAGCTGTTGTTCGCGCCGGAAA
CGCAACAGCCTGGCAGTTACCAACGGCGCAGAGAGAGCAGGCGTAGGGAT
TTTTAGATCGGGGTGGCGTTTTCCGCTAGGGATTTGGGGGGAGAGGGCTG
GGGGTAGAGATGAGGGGTCGGACGATTATCACCAGGAGATGACGCCGTTG
ACTGAGGGAGCAGAGAACGCGGAACGAGCAGAGAGAGAGCGATCGAAAGT
TTAGGGGGCCAAGGTGAACATACTCTCCCAGCACCTGACGCAGGCAAACC
CGACGACGAGCCACGACGATATAGGAGGCATGGCCTTCCTGGCAATCTTC
CTCTACATCGCCTGTGTCGCGGTGGCGATACCAGCTTGTAGTATGTCGCG
AAGCTGTTGTTCGCGCCGGAAACGCAACAGCCTGGCAGTTACCAACGGCG
CAGAGAGAGCAGGCGTAGGGATTTTTAGATCGGGGTGGCGTTTTCCGCTA
GGGATTTGGGGGGAGAGGGCTGGGGGTAGAGATGAGGGGTCGGACGATTA
TCACCAGGAGATGACGCCGTTGACTGAGGGAGCAGAGAACGCGGAACGAG
CAGAGAGAGAGCGATCGAAAGTTTAG
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