mRNA_H-elongata_contig202485.5735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202485.5735.1
Unique NamemRNA_H-elongata_contig202485.5735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202485.5735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202485contigH-elongata_contig202485:4..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.655437-CDS-H-elongata_contig202485:3..3121622930138.655437-CDS-H-elongata_contig202485:3..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202485 4..312 +
1691679295.753653-CDS-H-elongata_contig202485:3..3121691679295.753653-CDS-H-elongata_contig202485:3..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202485 4..312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.6795595-UTR-H-elongata_contig202485:312..5261622930138.6795595-UTR-H-elongata_contig202485:312..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig202485 313..526 +
1691679295.7617676-UTR-H-elongata_contig202485:312..5261691679295.7617676-UTR-H-elongata_contig202485:312..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig202485 313..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202485.5735.1prot_H-elongata_contig202485.5735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202485 4..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202485.5735.1

>prot_H-elongata_contig202485.5735.1 ID=prot_H-elongata_contig202485.5735.1|Name=mRNA_H-elongata_contig202485.5735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RVYLFFSPRGHEPPPTLRDYLTPNLSLHRNCFFTVVRQGTGPCGYGLKRD
LRQCVCLRRAPSNSLILLIVHHAALLNTRYMMCAAGPSTLNIPILTQSIT
FQ*
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mRNA from alignment at H-elongata_contig202485:4..526+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202485.5735.1 ID=mRNA_H-elongata_contig202485.5735.1|Name=mRNA_H-elongata_contig202485.5735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=523bp|location=Sequence derived from alignment at H-elongata_contig202485:4..526+ (Himanthalia elongata Himel1 dioecious)
CGCGTCTACCTCTTCTTTTCTCCACGCGGCCATGAACCTCCGCCCACCCT
CCGCGACTATCTCACCCCAAATCTCAGCCTTCACCGCAACTGCTTTTTTA
CTGTTGTGCGGCAGGGTACCGGTCCGTGCGGCTACGGCCTGAAGCGAGAT
TTGAGGCAATGCGTCTGCTTGCGGCGCGCCCCGTCAAACTCACTCATACT
ATTAATAGTACACCACGCTGCACTATTGAATACCAGGTATATGATGTGCG
CGGCGGGCCCATCAACCCTAAACATTCCAATCCTAACCCAATCAATCACT
TTCCAGTGATTCCCGGCTCCGACAAAACGAGAGCTAGAGAGAGGAAAACA
CACACGTAGCAAGCGCAAGCACAAGACCATATGCTCTGCTAACGCCCTCG
CGGTCAACAAAAGGAGAGTAACCAGAAAAAGGTACACTTGAGAACAAGAG
CTAAAACCGGTAGTGATGTTAGGAAGAGGTACCTTTCAGAACAGTTACCA
ATACCAACTATAAAAAAGGGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig202485:4..526+

>mRNA_H-elongata_contig202485.5735.1 ID=mRNA_H-elongata_contig202485.5735.1|Name=mRNA_H-elongata_contig202485.5735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig202485:4..526+ (Himanthalia elongata Himel1 dioecious)
CGCGTCTACCTCTTCTTTTCTCCACGCGGCCATGAACCTCCGCCCACCCT
CCGCGACTATCTCACCCCAAATCTCAGCCTTCACCGCAACTGCTTTTTTA
CTGTTGTGCGGCAGGGTACCGGTCCGTGCGGCTACGGCCTGAAGCGAGAT
TTGAGGCAATGCGTCTGCTTGCGGCGCGCCCCGTCAAACTCACTCATACT
ATTAATAGTACACCACGCTGCACTATTGAATACCAGGTATATGATGTGCG
CGGCGGGCCCATCAACCCTAAACATTCCAATCCTAACCCAATCAATCACT
TTCCAGTGACGCGTCTACCTCTTCTTTTCTCCACGCGGCCATGAACCTCC
GCCCACCCTCCGCGACTATCTCACCCCAAATCTCAGCCTTCACCGCAACT
GCTTTTTTACTGTTGTGCGGCAGGGTACCGGTCCGTGCGGCTACGGCCTG
AAGCGAGATTTGAGGCAATGCGTCTGCTTGCGGCGCGCCCCGTCAAACTC
ACTCATACTATTAATAGTACACCACGCTGCACTATTGAATACCAGGTATA
TGATGTGCGCGGCGGGCCCATCAACCCTAAACATTCCAATCCTAACCCAA
TCAATCACTTTCCAGTGA
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