mRNA_H-elongata_contig202466.5734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202466.5734.1
Unique NamemRNA_H-elongata_contig202466.5734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.020e-52
Identity = 133/352 (37.78%), Postives = 180/352 (51.14%), Query Frame = 1
Query:    1 CQKTGHIRPNCPERQCFKCRGWDHEANSCPSKIKTKEEATVMAVKQEPDFEVSTMAIEVEKNVPPVGELPLE-------STVE-----RWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            C K GH   NCPE +    R                EEA ++             A++V +    VG++  E         VE     R++ D+G +  M  ++D  V Y E    VR+A G   PI G G++ ++  S       +L  VAHVP L YNL+SL  + D G +    +K  + L    G+ ++    G L   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  282 CGKKGHQVANCPESKPV--RXXXXXXXXXXXXXXXTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 627          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.060e-52
Identity = 133/352 (37.78%), Postives = 180/352 (51.14%), Query Frame = 1
Query:    1 CQKTGHIRPNCPERQCFKCRGWDHEANSCPSKIKTKEEATVMAVKQEPDFEVSTMAIEVEKNVPPVGELPLE-------STVE-----RWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            C K GH   NCPE +    R                EEA ++             A++V +    VG++  E         VE     R++ D+G +  M  ++D  V Y E    VR+A G   PI G G++ ++  S       +L  VAHVP L YNL+SL  + D G +    +K  + L    G+ ++    G L   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  295 CGKKGHQVANCPESKPV--RXXXXXXXXXXXXXXXTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 640          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.090e-52
Identity = 133/352 (37.78%), Postives = 180/352 (51.14%), Query Frame = 1
Query:    1 CQKTGHIRPNCPERQCFKCRGWDHEANSCPSKIKTKEEATVMAVKQEPDFEVSTMAIEVEKNVPPVGELPLE-------STVE-----RWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            C K GH   NCPE +    R                EEA ++             A++V +    VG++  E         VE     R++ D+G +  M  ++D  V Y E    VR+A G   PI G G++ ++  S       +L  VAHVP L YNL+SL  + D G +    +K  + L    G+ ++    G L   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  438 CGKKGHQVANCPESKPV--RXXXXXXXXXXXXXXXTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRYVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 783          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.070e-48
Identity = 111/259 (42.86%), Postives = 148/259 (57.14%), Query Frame = 1
Query:  241 DSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVGDKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            D+G +  M  ++D  V Y E    VR+A G   PI G G++ ++  S       +L  VAHVP L YNL+SL  + D G +     K  +   + G+++       L   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  192 DTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKYDLELERGGESVRFPRYSNLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 446          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.640e-44
Identity = 105/263 (39.92%), Postives = 146/263 (55.51%), Query Frame = 1
Query:  229 RWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPGKIPSVS-PVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            R + D+G +  M  ++D  V Y E    VR+A G   PI G G++ ++  S       +L  VAHVP L YNL+SL  + D G +    +K  + L    G++++    G L   +G R      E A   IAPG   + S PV+IN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL K I   TSTRA K   R+F+D+ G+  V S+ GK   L++ D ++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  394 RCVADTGATTHMFANSDGFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHELELERGGGESVYSPRCGNLYVHNGCRTHT---EHAYTAIAPGDAKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANG 653          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5JW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW24_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.190e-41
Identity = 125/356 (35.11%), Postives = 176/356 (49.44%), Query Frame = 1
Query:    1 CQKTGHIRPNCPERQ---CFKCRGWDHEANSCPSKIKTKEEATVMAVKQEPDFEVSTMAIEVEKNVPPVGELPLE-------STVE-----RWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVM-PIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            C K GH   +C E +   C  C+G+ H+ + CP+     E A ++             A++V +    VG++  E         VE     R++ D+G +  M  ++D  V + E    VR+A G    PI G G++ M+  S       +L  VAHVP + YNL+    + D G +    +K  + L    G+ ++    G L   +GFR      E + A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKG+ KPI   TSTRA K   R+FVD+ G KS+    G  C+             YF++ KSD    FE++LA+ R  G
Sbjct:  383 CGKKGHQVADCTESKPVRCETCKGYGHDKSKCPT-----EGAVLVVEAPAGGASADATALDVAEEALVVGDISGECHKVVGRGGVEQARRGRYVADTGATTHMFANSDGFVRFEECDRRVRVAAGETFFPIVGYGDVRMTLSSRDCTTDLLLKRVAHVPRVYYNLVPRTSLFDDGSETKTLNKNELELERGGGEGVYFPRCGNLYVQNGFRTHT---EHSHAAIAPGNAKAPS-APVDINDFHCAHGHSHEVLLRTTAKQQGTKLVGELRECLGCSTAKGISKPIPNKTSTRAAKKLQRVFVDLSG-KSI----GWNCV-------------YFLKHKSDAAEAFERYLAENRAHG 711          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 6.450e-40
Identity = 93/197 (47.21%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  430 LLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            L+ YNL+SL  + D G +    DK  + L  + G+ ++    GKL   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  241 LVAYNLVSLTSLFDDGFETKTLDKHELELDRRGGEVVYFPRCGKLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 433          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.570e-38
Identity = 97/264 (36.74%), Postives = 130/264 (49.24%), Query Frame = 1
Query:  223 VERWITDSGCSRFMTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMAD-RGHKYVGDKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPGKIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            VE W  D+G +  MT     M + +     V+   G    IE  G L + F +        L NV + P LGYNL S     D     Y+G   GVM    NG   F    G L     +R   +     LA + P      S +D+N FH  +   HE LLR+TA++LG+ L G +  C GCS++K   K I   T  R+DK  GR+FVD+ G K VAS+GGK   +++ DDF+R TW YF++ KSD  + F  FLA  R  G
Sbjct:  428 VEDWYADTGTAFHMTDRLSCMKDLKPCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFPVELENVLYSPNLGYNLFSPSAEFDGESWNYLGGPDGVMTAF-NGHVTFQNLDGML-ISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADG 689          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5KSX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX8_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.090e-37
Identity = 96/222 (43.24%), Postives = 126/222 (56.76%), Query Frame = 1
Query:  262 MTPSADYMVNYREGKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVG-DKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPG--KIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDD 918
            M  ++D  V Y+E    VR+A G   P+ G G++ ++  S       IL  VA+V     NL+ L  + D G K    DK  + L  + G++++    G L   +GFR      E A A IAPG  K PS +PVDIN FH +HG  HE LLR+TA+Q G  L G LREC GCS AKGL KPI   TSTRA K   R+FVD+ G+  V S+GGK C+ V+ D+
Sbjct:    1 MFANSDGFVRYQECDRRVRVAAGETFPVVGYGDVTVTLSSRDGITDLILKWVAYVTRSDDNLVFLTSLFDDGFKTKTLDKHELELEKEVGESVYFPRCGNLYVQNGFRTHT---EHACAAIAPGNAKAPS-TPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGK-CIKVLEDN 217          
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.830e-36
Identity = 98/248 (39.52%), Postives = 132/248 (53.23%), Query Frame = 1
Query:  274 ADYMVNYREGKGVVRIADGRVM-PIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLLSLKMMADRGHKYVGDKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSGEFALATIAPGKI-PSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTLRECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCMLVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG 1011
            AD  V Y E    VR+A G  + PI G G++ ++  S       +L  VAHVP LG                +G ++G       G+++     G L   +GFR      E A A IAPG    S + VDIN  H +HG  HE LLR+ A+Q G +L G L EC GC  AKGL KPI +T STRA K   R+FVD+ G+  V S+GGK   L++ DD++R+   YF++ KSD    FE++LA+ R  G
Sbjct:  840 ADGFVRYEECDRRVRVAAGETLFPIVGYGDVTVTLRSRDGTTDLLLKRVAHVPRLG----------------IGGREG-------GESVSFPRCGNLYVQNGFRTHT---EHAYAAIAPGNARTSSASVDINDVHVAHGHSHELLLRTMAKQQGTMLLGELPECLGCLTAKGLSKPIPKT-STRAAKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANG 1060          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202466.5734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ8_9PHAE4.020e-5237.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.060e-5237.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.090e-5237.78Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5L8P7_9PHAE1.070e-4842.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JXF7_9PHAE2.640e-4439.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JW24_9PHAE4.190e-4135.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L060_9PHAE6.450e-4047.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.570e-3836.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSX8_9PHAE3.090e-3743.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE5.830e-3639.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202466contigH-elongata_contig202466:83..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score110.9
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog7029.ACYPI089092-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1011
Cds size1011
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.6084538-CDS-H-elongata_contig202466:82..10931622930138.6084538-CDS-H-elongata_contig202466:82..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202466 83..1093 -
1691679295.7389946-CDS-H-elongata_contig202466:82..10931691679295.7389946-CDS-H-elongata_contig202466:82..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202466 83..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202466.5734.1prot_H-elongata_contig202466.5734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202466 83..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202466.5734.1

>prot_H-elongata_contig202466.5734.1 ID=prot_H-elongata_contig202466.5734.1|Name=mRNA_H-elongata_contig202466.5734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp
CQKTGHIRPNCPERQCFKCRGWDHEANSCPSKIKTKEEATVMAVKQEPDF
EVSTMAIEVEKNVPPVGELPLESTVERWITDSGCSRFMTPSADYMVNYRE
GKGVVRIADGRVMPIEGIGNLPMSFWSGKDWVKAILPNVAHVPLLGYNLL
SLKMMADRGHKYVGDKKGVMLHLKNGKTLFGTSVGKLNCLSGFRRPLDSG
EFALATIAPGKIPSVSPVDINTFHASHGRVHEKLLRSTAQQLGVLLEGTL
RECEGCSVAKGLGKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRCM
LVISDDFSRFTWTYFMRQKSDTVALFEQFLADERVAG
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mRNA from alignment at H-elongata_contig202466:83..1093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202466.5734.1 ID=mRNA_H-elongata_contig202466.5734.1|Name=mRNA_H-elongata_contig202466.5734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-elongata_contig202466:83..1093- (Himanthalia elongata Himel1 dioecious)
TGCCAAAAGACAGGGCACATTCGTCCGAACTGTCCTGAGCGTCAATGTTT CAAGTGTCGGGGATGGGATCACGAGGCTAATTCGTGCCCATCCAAGATTA AGACTAAGGAGGAGGCCACTGTTATGGCGGTAAAGCAGGAGCCCGACTTT GAGGTATCGACTATGGCCATCGAGGTGGAAAAGAATGTTCCCCCGGTGGG TGAGCTACCGTTGGAAAGTACCGTTGAACGATGGATCACTGATAGTGGCT GCTCACGTTTCATGACGCCTTCCGCTGACTATATGGTTAACTATCGCGAG GGTAAAGGTGTGGTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGG CATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGTGAAGG CAATTTTACCAAATGTCGCTCATGTCCCATTACTGGGATACAACTTGCTG TCTCTGAAAATGATGGCTGATCGTGGTCACAAGTACGTTGGCGACAAAAA GGGGGTGATGTTGCATTTAAAAAATGGGAAGACTCTCTTCGGCACGTCCG TGGGTAAACTAAATTGCCTTTCCGGATTCCGCCGTCCTCTCGACTCGGGT GAGTTTGCGCTTGCAACGATTGCGCCGGGAAAGATTCCATCTGTTTCGCC TGTGGATATCAATACTTTTCACGCGTCCCACGGGCGTGTGCACGAGAAAT TACTCCGCTCTACAGCCCAACAGCTCGGGGTACTTCTTGAAGGAACCCTG AGGGAGTGCGAGGGGTGCTCAGTTGCTAAAGGTCTTGGTAAGCCGATCGG CAGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCGTTTGTTCGTAG ACATTTGTGGAGAAAAGTCTGTTGCATCGATCGGAGGGAAGCGATGCATG CTGGTAATCTCTGATGACTTCTCGCGTTTCACGTGGACATACTTCATGCG TCAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTTGGCAGACGAAC GCGTGGCAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig202466:83..1093-

>mRNA_H-elongata_contig202466.5734.1 ID=mRNA_H-elongata_contig202466.5734.1|Name=mRNA_H-elongata_contig202466.5734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig202466:83..1093- (Himanthalia elongata Himel1 dioecious)
TGCCAAAAGACAGGGCACATTCGTCCGAACTGTCCTGAGCGTCAATGTTT
CAAGTGTCGGGGATGGGATCACGAGGCTAATTCGTGCCCATCCAAGATTA
AGACTAAGGAGGAGGCCACTGTTATGGCGGTAAAGCAGGAGCCCGACTTT
GAGGTATCGACTATGGCCATCGAGGTGGAAAAGAATGTTCCCCCGGTGGG
TGAGCTACCGTTGGAAAGTACCGTTGAACGATGGATCACTGATAGTGGCT
GCTCACGTTTCATGACGCCTTCCGCTGACTATATGGTTAACTATCGCGAG
GGTAAAGGTGTGGTAAGAATTGCCGACGGCCGAGTGATGCCGATCGAAGG
CATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGATTGGGTGAAGG
CAATTTTACCAAATGTCGCTCATGTCCCATTACTGGGATACAACTTGCTG
TCTCTGAAAATGATGGCTGATCGTGGTCACAAGTACGTTGGCGACAAAAA
GGGGGTGATGTTGCATTTAAAAAATGGGAAGACTCTCTTCGGCACGTCCG
TGGGTAAACTAAATTGCCTTTCCGGATTCCGCCGTCCTCTCGACTCGGGT
GAGTTTGCGCTTGCAACGATTGCGCCGGGAAAGATTCCATCTGTTTCGCC
TGTGGATATCAATACTTTTCACGCGTCCCACGGGCGTGTGCACGAGAAAT
TACTCCGCTCTACAGCCCAACAGCTCGGGGTACTTCTTGAAGGAACCCTG
AGGGAGTGCGAGGGGTGCTCAGTTGCTAAAGGTCTTGGTAAGCCGATCGG
CAGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCGTTTGTTCGTAG
ACATTTGTGGAGAAAAGTCTGTTGCATCGATCGGAGGGAAGCGATGCATG
CTGGTAATCTCTGATGACTTCTCGCGTTTCACGTGGACATACTTCATGCG
TCAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTTGGCAGACGAAC
GCGTGGCAGGATGCCAAAAGACAGGGCACATTCGTCCGAACTGTCCTGAG
CGTCAATGTTTCAAGTGTCGGGGATGGGATCACGAGGCTAATTCGTGCCC
ATCCAAGATTAAGACTAAGGAGGAGGCCACTGTTATGGCGGTAAAGCAGG
AGCCCGACTTTGAGGTATCGACTATGGCCATCGAGGTGGAAAAGAATGTT
CCCCCGGTGGGTGAGCTACCGTTGGAAAGTACCGTTGAACGATGGATCAC
TGATAGTGGCTGCTCACGTTTCATGACGCCTTCCGCTGACTATATGGTTA
ACTATCGCGAGGGTAAAGGTGTGGTAAGAATTGCCGACGGCCGAGTGATG
CCGATCGAAGGCATTGGGAATTTACCGATGAGCTTCTGGTCTGGTAAGGA
TTGGGTGAAGGCAATTTTACCAAATGTCGCTCATGTCCCATTACTGGGAT
ACAACTTGCTGTCTCTGAAAATGATGGCTGATCGTGGTCACAAGTACGTT
GGCGACAAAAAGGGGGTGATGTTGCATTTAAAAAATGGGAAGACTCTCTT
CGGCACGTCCGTGGGTAAACTAAATTGCCTTTCCGGATTCCGCCGTCCTC
TCGACTCGGGTGAGTTTGCGCTTGCAACGATTGCGCCGGGAAAGATTCCA
TCTGTTTCGCCTGTGGATATCAATACTTTTCACGCGTCCCACGGGCGTGT
GCACGAGAAATTACTCCGCTCTACAGCCCAACAGCTCGGGGTACTTCTTG
AAGGAACCCTGAGGGAGTGCGAGGGGTGCTCAGTTGCTAAAGGTCTTGGT
AAGCCGATCGGCAGGACAACTTCGACAAGGGCCGATAAGGTATTTGGTCG
TTTGTTCGTAGACATTTGTGGAGAAAAGTCTGTTGCATCGATCGGAGGGA
AGCGATGCATGCTGGTAATCTCTGATGACTTCTCGCGTTTCACGTGGACA
TACTTCATGCGTCAAAAATCCGATACAGTTGCTCTTTTTGAGCAATTTTT
GGCAGACGAACGCGTGGCAGGA
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