mRNA_H-elongata_contig202399.5730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202399.5730.1
Unique NamemRNA_H-elongata_contig202399.5730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 1.400e-123
Identity = 177/293 (60.41%), Postives = 226/293 (77.13%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEF 879
            F+M+D+G+ S +LG+ + RDRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R YQ I  ++MY+AQV RYDI+YA  QL R M+KP+K HM AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNP NG+STSS + MLANAP+SF+  LQGLTA STMEAELV +AL MKEAVFC NM+ ELGF + F  +P+Y DNT+ LH  GNR+++ R KHIALR+FF++ELV EGKISIHY  TED LAD+G KH +KHR  +++ LIN F
Sbjct:  143 FKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 8.100e-119
Identity = 176/291 (60.48%), Postives = 225/291 (77.32%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLIN 873
            F+M+D+G+ S  LG+ + RDRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R YQ I  ++MY+AQV RYDI+YA  QL R+M+KP+K HM AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNP NG+STSS + MLANAP+SF+  LQGLTA STMEAELV +AL MKEAVFC NM+ ELG  + F  +P+Y DNT+ LH  GNR+++ R KHIALR+FF++ELV EGKISIHYV TED LAD+G KH +KHR  +++ LIN
Sbjct:  364 FKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 2.240e-116
Identity = 176/293 (60.07%), Postives = 226/293 (77.13%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEF 879
            F+M+D+G+ S +L + + RDRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R YQ I  ++MY+AQV RYDI+YA  QL R M+KP+K HM AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNP NG+STSS + MLANAP+SF+  LQGLTA STMEAELV +AL MKEAVFC NM+ ELGF + F  +P+Y DNT+ LH  GNR+++ R KHIALR+FF++ELV EGKISIHYV+TED LAD+G KH + HR  +++ LIN F
Sbjct:  703 FKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 5.880e-111
Identity = 174/293 (59.39%), Postives = 225/293 (76.79%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEF 879
            F+M+D+G+ S +LG+ + RDRE  T+TISQ+ Y + +++R+G+    P  TPG G E+S  QPE+ LL+E+E R YQ I  ++MY+AQV RYDI+YA  QL R M+KP+K HM AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNP NG+STSS + +LANAP+SF+  LQGLTA STMEAELV +AL M EAVF  NM+ ELGF + F  +P+Y DNT+ LH  GNR+++ R KHIALR+FF++ELV EGKISIHYV TED LAD+G KH +KHR  +++ LIN F
Sbjct: 1372 FKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 7.650e-103
Identity = 157/286 (54.90%), Postives = 208/286 (72.73%), Query Frame = 1
Query:   28 SRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEFKA 885
            S I G+ + RDRE+ T++IS++ Y++ ++ R+GM +C P  TPG+GP  S  QPEE LLN+EE R YQ I   ++YL+Q+ RYDI+YA +QL R M+KP+K HMGAAK    YLAG+  F I YK+GGF+L AF+D+NWGNNP NG+STSS + ML +AP++FK  LQ LT QSTME ELV AAL +KEAVFC N++ ELGF +    VPLY DNT+ LH  GNR+Y+   KHIALR+FF++ELV EG+I+IHYV  +   AD+G KHL+K R   ++ +I  F  
Sbjct:  435 SLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 2.220e-98
Identity = 155/262 (59.16%), Postives = 198/262 (75.57%), Query Frame = 1
Query:   94 NYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEF 879
            NYT  ++ R+GM SC P  T G GPELS+ QPEE LLN E K+ YQAI  +VMYLAQVTRYDI+Y  +Q  RAMS P+K HMGAAKHLL YL+GS DFSITYK+GGF L A S+AN G+N  NG+S SS I+M++ AP S K  LQ LTA ST+EAELV +AL MKE +FC NM+ ELGF   F S PL+ID+T+ L+V GN+T++   KH+ALR+F+++++V+EG+ISIHY+ TED LAD+G ++L+K RH  +I  I  F
Sbjct:  515 NYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 1.320e-93
Identity = 145/295 (49.15%), Postives = 204/295 (69.15%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEFKA 885
            FEM+DMG+V R++GI V RD E  T+ ISQ  Y  +++QRYGME  NP  TPG G ELS  QP+++LL  EEK+ +Q I  +++YLAQ TRYD+ YAV+QLTRA + PA+ HM AAKHLL YL G+ D  I YK+G FRL+ F+D+++G NP NGRST+  +  L    IS+  + Q L AQ+T+EAEL   + + +EAV+  N + E+GF ++F SVP+  D+T AL VA N  ++ R KHIALR+FF++EL +  +I++H+  +   LAD+  KHL K R   I++LI ++K 
Sbjct:    4 FEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDYKC 297          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 9.220e-92
Identity = 155/271 (57.20%), Postives = 193/271 (71.22%), Query Frame = 1
Query:   64 EKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINE 876
            E   +T SQ+NY   ++ R+GM S  P  T G GPELS                  AI  +V+YLAQ+TRYDI+Y  +QL RAMS P+K HMGAAKHLL YL+GS DFSITYK+GGF L A SDANWGNNP N +S SS I+M++ AP+SFK  LQ LTA ST+EAELV AAL MKE +FC NM+ ELGF   F S PLYI NT+ LHV GN+T++ R KH+ALR+F+++E+V+EG+ISIHY+ TED LAD+G KHL+K RH  +I  I +
Sbjct:  436 EDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 1.120e-90
Identity = 146/295 (49.49%), Postives = 214/295 (72.54%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEFKA 885
            FEM+DMG+V RILGI+V RD E+ T+ ISQ++Y   +++R+GM+  NP  TPG G E+S NQP++++L   +K++YQ++A +++YLAQ TR+D+ YA  QL++A S PA+ +M AAKH+L YL G+    I YK+G FRLAAF+D+++G NP NGRST+  +  LA   IS+  + Q LTAQST+EAE+   + + +EAV+  N + EL F ++FGSVP+  D+T AL VAGN  ++ R KH+ALRYFF++ELV  G+I++H+  +E QLAD+  K+L KHR  +II+ I +F  
Sbjct:  408 FEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 701          
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.580e-90
Identity = 145/312 (46.47%), Postives = 214/312 (68.59%), Query Frame = 1
Query:    1 FEMSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTPGIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLTRAMSKPAKAHMGAAKHLLCYLAGS-----------------ADFSITYKQGGFRLAAFSDANWGNNPHNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFCPNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEFKA 885
            FEM+DMG+V RILGI+V RD E+ T+ ISQ++Y   +++R+GM+  NP  TPG G E+S NQP++++L   +K++YQ++  +++YLAQ TR+D+ YA  QL++A S PA+ +M AAKH+L YL G+                 +   I YK+G FRLAAF+D+++G NP NGRST+  +  LA   IS+  + Q LTAQST+EAE+   + + +EAV+  N + EL F ++FGSVP+  D+T AL VAGN  ++ R KH+ALRYFF++ELV  G+I++H+  +E QLAD+  K+L KHR  +II+ I +F  
Sbjct:   23 FEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202399.5730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.400e-12360.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE8.100e-11960.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.240e-11660.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE5.880e-11159.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE7.650e-10354.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE2.220e-9859.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC04_9PHAE1.320e-9349.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE9.220e-9257.20CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF89_9PHAE1.120e-9049.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE1.580e-9046.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202399contigH-elongata_contig202399:130..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score171.8
Seed ortholog evalue4.8e-40
Seed eggNOG ortholog202698.XP_007378181.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size888
Cds size882
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.3905668-CDS-H-elongata_contig202399:129..10111622930138.3905668-CDS-H-elongata_contig202399:129..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202399 130..1011 -
1691679295.6794338-CDS-H-elongata_contig202399:129..10111691679295.6794338-CDS-H-elongata_contig202399:129..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202399 130..1011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.4049478-UTR-H-elongata_contig202399:1011..10171622930138.4049478-UTR-H-elongata_contig202399:1011..1017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig202399 1012..1017 -
1691679295.6880946-UTR-H-elongata_contig202399:1011..10171691679295.6880946-UTR-H-elongata_contig202399:1011..1017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig202399 1012..1017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202399.5730.1prot_H-elongata_contig202399.5730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202399 130..1011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202399.5730.1

>prot_H-elongata_contig202399.5730.1 ID=prot_H-elongata_contig202399.5730.1|Name=mRNA_H-elongata_contig202399.5730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MSDMGDVSRILGINVTRDREKRTITISQKNYTEEVVQRYGMESCNPAYTP
GIGPELSLNQPEEKLLNEEEKRLYQAIAVAVMYLAQVTRYDILYAVNQLT
RAMSKPAKAHMGAAKHLLCYLAGSADFSITYKQGGFRLAAFSDANWGNNP
HNGRSTSSCIVMLANAPISFKVELQGLTAQSTMEAELVTAALTMKEAVFC
PNMILELGFDESFGSVPLYIDNTSALHVAGNRTYNPRAKHIALRYFFVQE
LVEEGKISIHYVKTEDQLADLGIKHLSKHRHHNIIKLINEFKA*
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mRNA from alignment at H-elongata_contig202399:130..1017-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202399.5730.1 ID=mRNA_H-elongata_contig202399.5730.1|Name=mRNA_H-elongata_contig202399.5730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig202399:130..1017- (Himanthalia elongata Himel1 dioecious)
TTCGAGATGTCCGACATGGGCGACGTGTCGAGAATCCTCGGTATAAACGT CACCCGCGACCGTGAGAAGAGGACTATCACCATTAGTCAGAAGAATTACA CGGAGGAGGTGGTGCAGCGCTACGGTATGGAAAGCTGCAACCCCGCGTAC ACTCCCGGAATAGGGCCGGAGCTGTCTCTAAACCAACCGGAGGAGAAGCT GTTGAACGAGGAGGAGAAGCGGCTCTACCAGGCAATCGCTGTAGCCGTGA TGTACCTTGCACAGGTCACCCGCTACGACATTCTCTATGCGGTCAATCAG CTGACGAGGGCCATGTCCAAGCCCGCGAAAGCTCACATGGGGGCGGCCAA GCACCTGCTTTGCTACTTGGCCGGATCCGCAGACTTCTCTATCACCTACA AGCAAGGTGGGTTTAGGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAAC AACCCACACAACGGCAGATCTACGTCATCGTGCATCGTAATGCTGGCCAA CGCCCCGATCAGCTTCAAAGTGGAACTGCAGGGGCTGACCGCACAGTCCA CGATGGAGGCAGAGCTCGTGACGGCAGCTCTGACAATGAAGGAGGCGGTG TTCTGCCCCAACATGATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGCAG CGTGCCACTGTACATCGACAACACGTCGGCGCTGCACGTCGCCGGCAACC GCACCTACAACCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTG CAAGAGTTGGTAGAGGAGGGCAAGATCAGCATCCACTACGTCAAGACCGA GGATCAGCTGGCGGACTTGGGCATCAAGCACCTTAGCAAGCACCGTCATC ACAACATCATCAAGCTCATCAACGAGTTCAAGGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig202399:130..1017-

>mRNA_H-elongata_contig202399.5730.1 ID=mRNA_H-elongata_contig202399.5730.1|Name=mRNA_H-elongata_contig202399.5730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig202399:130..1017- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACATGGGCGACGTGTCGAGAATCCTCGGTATAAACGTCACCCG
CGACCGTGAGAAGAGGACTATCACCATTAGTCAGAAGAATTACACGGAGG
AGGTGGTGCAGCGCTACGGTATGGAAAGCTGCAACCCCGCGTACACTCCC
GGAATAGGGCCGGAGCTGTCTCTAAACCAACCGGAGGAGAAGCTGTTGAA
CGAGGAGGAGAAGCGGCTCTACCAGGCAATCGCTGTAGCCGTGATGTACC
TTGCACAGGTCACCCGCTACGACATTCTCTATGCGGTCAATCAGCTGACG
AGGGCCATGTCCAAGCCCGCGAAAGCTCACATGGGGGCGGCCAAGCACCT
GCTTTGCTACTTGGCCGGATCCGCAGACTTCTCTATCACCTACAAGCAAG
GTGGGTTTAGGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAACAACCCA
CACAACGGCAGATCTACGTCATCGTGCATCGTAATGCTGGCCAACGCCCC
GATCAGCTTCAAAGTGGAACTGCAGGGGCTGACCGCACAGTCCACGATGG
AGGCAGAGCTCGTGACGGCAGCTCTGACAATGAAGGAGGCGGTGTTCTGC
CCCAACATGATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGCAGCGTGCC
ACTGTACATCGACAACACGTCGGCGCTGCACGTCGCCGGCAACCGCACCT
ACAACCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGAG
TTGGTAGAGGAGGGCAAGATCAGCATCCACTACGTCAAGACCGAGGATCA
GCTGGCGGACTTGGGCATCAAGCACCTTAGCAAGCACCGTCATCACAACA
TCATCAAGCTCATCAACGAGTTCAAGGCTTAAATGTCCGACATGGGCGAC
GTGTCGAGAATCCTCGGTATAAACGTCACCCGCGACCGTGAGAAGAGGAC
TATCACCATTAGTCAGAAGAATTACACGGAGGAGGTGGTGCAGCGCTACG
GTATGGAAAGCTGCAACCCCGCGTACACTCCCGGAATAGGGCCGGAGCTG
TCTCTAAACCAACCGGAGGAGAAGCTGTTGAACGAGGAGGAGAAGCGGCT
CTACCAGGCAATCGCTGTAGCCGTGATGTACCTTGCACAGGTCACCCGCT
ACGACATTCTCTATGCGGTCAATCAGCTGACGAGGGCCATGTCCAAGCCC
GCGAAAGCTCACATGGGGGCGGCCAAGCACCTGCTTTGCTACTTGGCCGG
ATCCGCAGACTTCTCTATCACCTACAAGCAAGGTGGGTTTAGGCTTGCTG
CCTTCTCAGATGCCAACTGGGGCAACAACCCACACAACGGCAGATCTACG
TCATCGTGCATCGTAATGCTGGCCAACGCCCCGATCAGCTTCAAAGTGGA
ACTGCAGGGGCTGACCGCACAGTCCACGATGGAGGCAGAGCTCGTGACGG
CAGCTCTGACAATGAAGGAGGCGGTGTTCTGCCCCAACATGATTCTGGAG
CTTGGCTTCGATGAGAGCTTCGGCAGCGTGCCACTGTACATCGACAACAC
GTCGGCGCTGCACGTCGCCGGCAACCGCACCTACAACCCTCGTGCAAAGC
ACATCGCGCTGAGGTATTTTTTCGTGCAAGAGTTGGTAGAGGAGGGCAAG
ATCAGCATCCACTACGTCAAGACCGAGGATCAGCTGGCGGACTTGGGCAT
CAAGCACCTTAGCAAGCACCGTCATCACAACATCATCAAGCTCATCAACG
AGTTCAAGGCTTAA
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