mRNA_H-elongata_contig202226.5724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202226.5724.1
Unique NamemRNA_H-elongata_contig202226.5724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202226.5724.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.080e-27
Identity = 78/124 (62.90%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 QAAVEDEKNGSAGDSDATSLLRGMSPRASRVEAEITRRLRSEFASLVKPPQTITVTVAGGGEAVGGAGMGVSVGGRKADDLERVGGGWVRQRLERERKRQALLSCLRPFSALGSGIEAEKQFSR 372
            QAA EDE NG AGD+DATSLLRGMS RASRVEAEITRRLRSEFASL+KP      T A G  A  G   G              GG        RE +RQALLSCLRPFSALGSGIEAEKQF+R
Sbjct:  272 QAAAEDEANG-AGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPAAGDGASAGNKAGXXXXXXXXXXXXGDGGA-------RESRRQALLSCLRPFSALGSGIEAEKQFAR 387
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BLAST of mRNA_H-elongata_contig202226.5724.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.110e-26
Identity = 76/123 (61.79%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    4 AAVEDEKNGSAGDSDATSLLRGMSPRASRVEAEITRRLRSEFASLVKPPQTITVTVAGGGEAVGGAGMGVSVGGRKADDLERVGGGWVRQRLERERKRQALLSCLRPFSALGSGIEAEKQFSR 372
            AA EDE NG AGD+DATSLLRGMS RASRVEAEITRRLRSEFASL+KP      T A        AG G S G                    RE +RQALLSCLRPFSALGSGIEAEKQF+R
Sbjct:  280 AAAEDEANG-AGDADATSLLRGMSSRASRVEAEITRRLRSEFASLLKPRHPWPSTPA--------AGDGASAGNXXXXXXXXXXXXXXXXXGARESRRQALLSCLRPFSALGSGIEAEKQFAR 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202226.5724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA5_ECTSI2.080e-2762.90Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE2.110e-2661.79Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202226contigH-elongata_contig202226:161..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog2880.D8LMA5
Preferred nameCOG2
KEGG koko:K20289
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2307@1,KOG2307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionweakly similar to brefeldin A-sensitive Golgi protein-like
Ec32 orthologEc-05_002100.1
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.7457674-CDS-H-elongata_contig202226:160..5351622930137.7457674-CDS-H-elongata_contig202226:160..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202226 161..535 +
1691679295.4165766-CDS-H-elongata_contig202226:160..5351691679295.4165766-CDS-H-elongata_contig202226:160..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202226 161..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202226.5724.1prot_H-elongata_contig202226.5724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202226 161..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202226.5724.1

>prot_H-elongata_contig202226.5724.1 ID=prot_H-elongata_contig202226.5724.1|Name=mRNA_H-elongata_contig202226.5724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
QAAVEDEKNGSAGDSDATSLLRGMSPRASRVEAEITRRLRSEFASLVKPP
QTITVTVAGGGEAVGGAGMGVSVGGRKADDLERVGGGWVRQRLERERKRQ
ALLSCLRPFSALGSGIEAEKQFSR*
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mRNA from alignment at H-elongata_contig202226:161..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202226.5724.1 ID=mRNA_H-elongata_contig202226.5724.1|Name=mRNA_H-elongata_contig202226.5724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig202226:161..535+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGCCGTGGAAGACGAAAAGAATGGCAGCGCGGGAGACTCCGACGC
GACGTCACTCCTCCGAGGCATGTCTCCTAGGGCCTCCCGCGTGGAGGCCG
AGATCACCCGCCGGCTGCGCTCCGAGTTTGCATCGCTCGTCAAACCCCCG
CAGACGATTACTGTTACTGTCGCTGGAGGTGGTGAGGCGGTGGGCGGGGC
GGGAATGGGGGTGTCGGTGGGTGGCAGGAAGGCAGACGATTTGGAGCGGG
TCGGGGGTGGGTGGGTGCGGCAGAGGCTTGAAAGGGAAAGAAAGCGACAG
GCGCTGCTGAGTTGCTTGCGACCGTTCTCGGCGCTTGGAAGCGGGATCGA
GGCGGAGAAGCAATTTTCCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig202226:161..535+

>mRNA_H-elongata_contig202226.5724.1 ID=mRNA_H-elongata_contig202226.5724.1|Name=mRNA_H-elongata_contig202226.5724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig202226:161..535+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGCCGTGGAAGACGAAAAGAATGGCAGCGCGGGAGACTCCGACGC
GACGTCACTCCTCCGAGGCATGTCTCCTAGGGCCTCCCGCGTGGAGGCCG
AGATCACCCGCCGGCTGCGCTCCGAGTTTGCATCGCTCGTCAAACCCCCG
CAGACGATTACTGTTACTGTCGCTGGAGGTGGTGAGGCGGTGGGCGGGGC
GGGAATGGGGGTGTCGGTGGGTGGCAGGAAGGCAGACGATTTGGAGCGGG
TCGGGGGTGGGTGGGTGCGGCAGAGGCTTGAAAGGGAAAGAAAGCGACAG
GCGCTGCTGAGTTGCTTGCGACCGTTCTCGGCGCTTGGAAGCGGGATCGA
GGCGGAGAAGCAATTTTCCCGGTGACAGGCGGCCGTGGAAGACGAAAAGA
ATGGCAGCGCGGGAGACTCCGACGCGACGTCACTCCTCCGAGGCATGTCT
CCTAGGGCCTCCCGCGTGGAGGCCGAGATCACCCGCCGGCTGCGCTCCGA
GTTTGCATCGCTCGTCAAACCCCCGCAGACGATTACTGTTACTGTCGCTG
GAGGTGGTGAGGCGGTGGGCGGGGCGGGAATGGGGGTGTCGGTGGGTGGC
AGGAAGGCAGACGATTTGGAGCGGGTCGGGGGTGGGTGGGTGCGGCAGAG
GCTTGAAAGGGAAAGAAAGCGACAGGCGCTGCTGAGTTGCTTGCGACCGT
TCTCGGCGCTTGGAAGCGGGATCGAGGCGGAGAAGCAATTTTCCCGGTGA
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