mRNA_H-elongata_contig20214.5721.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20214.5721.1 vs. uniprot
Match: D8LLH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI) HSP 1 Score: 596 bits (1536), Expect = 8.270e-186 Identity = 449/989 (45.40%), Postives = 577/989 (58.34%), Query Frame = 1
Query: 7 KIITTQAGERRQSLFQEQHVP-QRERHLCPLAITDRRQEQVEKITEDTREIVSSSEALAGLLRDEMEGRGGELSERRRAAEDGLTSWEQAAEADPALRARRRVYDCEILVLSHRMAGGSA---SLATAFYRLREQTGRQRRARAWFSEARGRRDARLVCAAFDALARGGRSKAAEAVVAVARCRAGLATWRRTTALARRVKTFRWARDRALAGAGFRRWRQR-------AGGINYGDE--WAMEVVEEETLLARSLGLFRERRAKRIVLRAWHGAVQTAAVVEIMKETGARHSTGRSGRARRQSSGFGRQ---SGVISGRDELSPGGACGARLRNAEAIARRRRFETEGRFALRWWWQQSRSSALGKTAGQRRSIRQWRRWAENARSARRASTKARERYIVTLGRRVITAWSVTMATRARRRAGAAAFFASLSSVIRRKACRRWASHAALTAVEAEQTMAALEHCYNGCLRSHLRAWSALAKKRRLLCHCLELLGRGHRVVKIGTAFRAWRRGTAHVRDIVXXXXXIKASERQRGAWSAAATRRRSLAALSLSFHVWSRLCRRAAVIHSLTIRAADRKRRLALARGFRAFCLSRRWGIIAIDRRRTVPGRSGCGAGGSGDNDEIHYQSEGD------EAAQAVETVVQARAALEGRVDHLRARLAEERALALERRAEADGEGLLVAPSLGARFGDLTKRQSEAFEKLQAETLEMRQRATLAEGAAQEARAETTRKAVAARAAIEETLAEGRKLKQELEQRKALRARVDLEAARAASQATALSDRFAGAEQELGFETTRNADIRCAKDKENSRLRAAATVGERRLVAAESALRRKDKEIEYLRSRAARQGFNNGG----------GKSAEA--LQFRIFAVEANARCAMERCSEAAVEKRAAAGSAMAEAFRAAGSETAV----EADRRAIRFERKMAEAGRLVSESAANERREVAGLALRRAEAKLRRTADLSLRASLNHTPLREHPRS 2859
+ + +AG Q L + + V + ER+ LA R QEQVE T +TR+IVS+SEA+A LR EMEGRGGELS R+R AE+GL WE+AA+ DP LRARRR YDCE+L L HRM G A SLA+AF+ LR +T +QRRAR WF+ + RR+A LV +AF ALARG R +AA A VA ARCR GLA W+R LAR+++T W R+RA A + WRQR AGG G++ WA E E L R L LFRERRAKR+VL+AW A QT+AVV +M+ G A+ G+GR+ G + +DE++ GARLR AEA+ RR RFET+ A RWW + + L +TAGQRR+IR+WR + RS+ A+ +AR Y+++LGRRV+ AWS ATR RRR GAA+ ++L+ +R++ R+WA AA A EA+ T+ AL H + CLR HLRAWSA A++R L C+ LL RG RV R WRR TA RD I AW+AAA RRR AALS+ F W+ RR A IHSLT A RS G Y+ GD EA V+T + A+ ALEG+ + E A +E + G G + L T+++S KLQAET E+RQR +A + R E RKA A ++E LAE +LK + EQ + L A++D EA +AA+QA ALSDR AGAEQ+LGFE TRN +++ N+RLRAAAT E R+ AES LRRK EIE LRS+ A+ G + GG G++++ L+FRIFA A+AR A+ERC+ AA E+R AAGS +AEA R AGSE EA+ E +A A R+ +ES A+ERREVA LALR AEAKLR +ADLSLRASL+H PL +PRS
Sbjct: 906 RTLIAKAGGEVQVLHESRRVAHEAERYHATLA---RIQEQVEATTGETRKIVSTSEAIAWELRAEMEGRGGELSCRKRDAEEGLADWERAAQNDPDLRARRRAYDCEVLALRHRMGCGGANNISLASAFHLLRARTAQQRRAREWFARSTARRNALLVRSAFTALARGSRCRAATAAVAAARCRRGLAAWKRAATLARKIRTLCWLRERAAAVKALQGWRQRCVKAVYLAGGSAGGEDGRWAAGREEREDLEWR-LELFRERRAKRVVLQAWRAAAQTSAVVTVMQ-----------GEAK---CGWGREVGRRGCAAIQDEVAACSGWGARLRTAEALGRRHRFETQIGSAFRWWRRHRQCKVLARTAGQRRAIRRWRHRVNDIRSSHEATAEARGSYVLSLGRRVLAAWSSAAATRVRRRTGAASLASALAFSTKRRSFRQWAFQAAAAAREADNTVVALGHYGDRCLRDHLRAWSAFARERCALRRCVGLLLRGRRVCLTAAGLRLWRRQTAKARDANLRECRIM-------AWTAAAARRRRFAALSVCFSAWTSTRRRVAAIHSLT--RXXXXXXXXXXXXXXXXXXXXXXXXAATATAAATAERSHISRGEDTTRYNNGYRPRGDMGVVVEEATAPVQTAIAAKVALEGKREGEEGGDGEVAAAVVEEPFRSRGRGKMGPTKL-------TEKESLLIIKLQAETRELRQREAVAAKQEERLRLEAARKAAATAESLESALAERNRLKAQAEQHEVLFAQLDSEAQQAAAQAAALSDRLAGAEQDLGFEATRNTQELRERNEGNARLRAAATAAEERIAIAESTLRRKGLEIEELRSKCAKAGLDIGGRGKGGRQGRGGRASDTAGLEFRIFAASADARSALERCTVAADERRTAAGSVLAEALRVAGSEADTIKSNEAEFDCTSHEGGVAAARRIAAESVADERREVADLALREAEAKLRNSADLSLRASLDHRPL-ANPRS 1859
BLAST of mRNA_H-elongata_contig20214.5721.1 vs. uniprot
Match: A0A6H5JU58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 7.960e-126 Identity = 391/986 (39.66%), Postives = 519/986 (52.64%), Query Frame = 1
Query: 7 KIITTQAGERRQSLFQEQHVP-QRERHLCPLAITDRRQEQVEKITEDTREIVSSSEALAGLLRDEMEGRGGELSERRRAAEDGLTSWEQAAEADPALRARRRVYDCEILVLSHRMAGGSA---SLATAFYRLREQTGRQRRARAWFSEARGRRDARLVCAAFDALARGGRSKAAEAVVAVARCRAGLATWRRTTALARRVKTFRWARDRALAGAGFRRWRQRA--------GGINYGD-EWAMEVVEEETLLARSLGLFRERRAKRIVLRAWHGAVQTAAVVEIMK-ETGARHSTGRSGRARRQSSGFGRQSGVISGRDELSPGGACGARLRNAEAIARRRRFETEGRFALRWWWQQSRSSALGKTAGQRRSIRQWRRWAENARSARRASTKARERYIVTLGRRVITAWSVTMATRARRRAGAAAFFASLSSVIRRKACRRWASHAALTAVEAEQTMAALEHCYNGCLRSHLRAWSALAKKRRLLCHCLELLGRGHRVVKIGTAFRAWRRGTAHVRDIVXXXXXIKASERQRGAWSAAATRRRSLAALSLSFHVWSRLCRRAAVIHSLTIRAADRKRRLALARGFRAFCLSRRWGIIAIDRRRTVPGRSGCGAGGSGDNDEIHYQSEGDEAAQAVETVVQARAALEGRVDHLRARLAEERALALERRAEADGEGLLVAPSLGARFGD----------LTKRQSEAFEKLQAETLEMRQRATLAEGAAQEARAETTRKAVAARAAIEETLAEGRKLKQELEQRKALRARVDLEAARAASQATALSDRFAGAEQELGFETTRNADIRCAKDKENSRLRAAATVGERRLVAAESALRRKDKEIEYLRSRAARQGFNNGG----------GKSAEA--LQFRIFAVEANARCAMERCSEAAVEKRAAAGSAMAEAFRAAGSET-AVEADRRAI----RFERKMAEAGRLVSESAANERREVAGLALRRAEAKLRRTADLSLRASLNHTPL 2841
+ + +AG Q L + + V + ER+ LA R QEQVE T +TR+IVS+SEA+A LR EMEGRGGELS R+R AE+GL WE+AA+ DP LRARRR YDCE+LVL HRM G A SLA+AF+ LR +T +QRRAR WF + R +A LV +AF ALARG RS+AA A VA ARCR GLA W+R LAR+++T W R+RA A R WRQR GG+ D WA E E R L LFRERRAKRIVL+AW A QT+AV+ +M ET R G G GR+ G +DE++ GARLR AEA+ RR RFET+ A RWW + + + L +TAGQRR+IR+WR + RS+ A+ +AR GR AW+ A R R FA+LS W S A T A +S L+ +R R H + G + G RD+ + A A SL L+ +R+ R AV+ + A +R A R+ + R+ V + +EG++ A ++ + + ++R E G+G + A +G + LT+++S KLQAET EMR+R +A + + E RKA A A++E LAE +LK + EQR+ L A++D EA +AA+QA ALSDR AGAEQ+LGFE TRN +++ N+RLRAAAT E R+ AES LR+K EIE LRS+ A+ G GG G++++ L+FRIFA A+AR A++RC+ AA E+R AAGS +AEA R AGSE ++++ R E +A A R+ +ES A+ERREVA LALR AEAKLR +ADLSLRASL+H PL
Sbjct: 992 RTLIAKAGGEVQVLHESRRVAHEAERYHATLA---RIQEQVEATTGETRKIVSTSEAIAWELRAEMEGRGGELSCRKRDAEEGLADWERAAQNDPHLRARRRAYDCELLVLRHRMGCGGANNISLASAFHHLRTRTAQQRRAREWFERSTARCNALLVRSAFSALARGSRSRAATAAVAAARCRRGLAAWKRAATLARKIQTLCWMRERAAAVKTLRGWRQRCVKAVYLEGGGVGGDDGRWATGREEREDSEWR-LELFRERRAKRIVLQAWRAAAQTSAVIAVMLGET-------RCG----WGPGVGRR-GCAPIQDEVAAYSGWGARLRTAEALGRRHRFETQIGSAFRWWRRHRQCNVLARTAGQRRAIRRWRHRVNDIRSSHEATAEAR-------GRSPRLAWTAAFARRRR--------FAALSVCF-----SAWTSTPRRVAAIHSLTRRAAAXXXXXXXXXXXXXFS-LSGRRAATAALAATAERSHN--RRGEDMTRYNNGHGPRRDMGFVVEEATDPIQTAIAAKVALEGEVSLLRAGLAQEK-ARVLERHAVVCEMAKEVARSERERA------------RYAKVL---RQQVKEXXXXXXXXXXXXPNMTTGAEGEDRALGKPSLPW-----------------HDGFMTVQREGEESGDGEVAAAVVGEPYRSRGSGKMGSMKLTEKESLLIMKLQAETREMRRREAVAAKQEERLKLEAARKAAATAASLESALAEQNRLKAQAEQREVLIAQLDSEAQQAAAQAAALSDRLAGAEQDLGFEATRNTQELRERNEGNARLRAAATAAEERIAIAESTLRQKRLEIEELRSKCAKAGLGIGGRGKGGRQSRGGRASDTAGLEFRIFAASADARSALDRCTVAADERRTAAGSVLAEALRVAGSEADTIKSNEEDFDCTSRDEGGVAAARRIAAESVADERREVADLALREAEAKLRHSADLSLRASLDHRPL 1905 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20214.5721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20214.5721.1 >prot_H-elongata_contig20214.5721.1 ID=prot_H-elongata_contig20214.5721.1|Name=mRNA_H-elongata_contig20214.5721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=953bp MGKIITTQAGERRQSLFQEQHVPQRERHLCPLAITDRRQEQVEKITEDTRback to top mRNA from alignment at H-elongata_contig20214:1978..6865- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20214.5721.1 ID=mRNA_H-elongata_contig20214.5721.1|Name=mRNA_H-elongata_contig20214.5721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4888bp|location=Sequence derived from alignment at H-elongata_contig20214:1978..6865- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20214:1978..6865- >mRNA_H-elongata_contig20214.5721.1 ID=mRNA_H-elongata_contig20214.5721.1|Name=mRNA_H-elongata_contig20214.5721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5718bp|location=Sequence derived from alignment at H-elongata_contig20214:1978..6865- (Himanthalia elongata Himel1 dioecious)back to top |