mRNA_H-elongata_contig20204.5717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20204.5717.1
Unique NamemRNA_H-elongata_contig20204.5717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.980e-31
Identity = 96/199 (48.24%), Postives = 104/199 (52.26%), Query Frame = 1 
Query:    1 DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLG-GDRGGA-MFGSIVRLVGVSAALRPAVWQQLVLRAVS---------------------------------VDSSGGGESFYLPCLSVVGSSLAKGETPTVAVGAVAACCSFADLVEAGRVGPHAALIARDVPRAFGAVAPHKRRDHDGGCR 492
            DGGR       L  ELPAFLA AV   GSLR LAA Q VSRAWR +LG GD  G  +FG IVR  GV A+LRPAVWQ LV RAV+                                   S GG ESF         SS +   +P+          SFA LVE GR GPHAALIARDVPRAFGAVAPHKRR+   G R
Sbjct: 1372 DGGR-VCDLEPLARELPAFLARAVGLSGSLRALAACQAVSRAWRDALGFGDESGKELFGGIVRSSGVPASLRPAVWQMLVQRAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIGGRESF---------SSCSFSSSPS----------SFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSR 1550
[Close]
BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.030e-30
Identity = 87/180 (48.33%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:    1 DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLG--GDRGGAMFGSIVRLVGVSAALRPAVWQQLVLRAVSVDSSGGGESFYLPCLSVVGSSLAKGETPTVAV---GAVAACC------SFADLVEAGRVGPHAALIARDVPRAFGAVAPHKRRDHDGGCRGRVVP 507
            DGGR       L  ELPAFL  AV   GSLR LAA Q VSRAWR +LG   +RG  +FG IVR  GV A+LRPAVWQ LV RAV+                              ++    + ++C       SFA LVE GR GPHAALIARDVPRAFGAVAPHKRR+   G R  + P
Sbjct: 1631 DGGR-ICDLEPLARELPAFLTRAVGLSGSLRALAACQAVSRAWRDALGFGEERGKDLFGGIVRSSGVPASLRPAVWQMLVQRAVAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSICGRDSFSSCSFSSSLSSFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSRSTITP 1809
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G646_ECTSI2.980e-3148.24Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JL00_9PHAE1.030e-3048.33Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20204contigH-elongata_contig20204:1067..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7G646
KEGG koko:K17902,ko:K18341,ko:K20242
KEGG Pathwayko04152,ko04919,ko04931,map04152,map04919,map04931
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG4436@1,KOG4436@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.0444512-CDS-H-elongata_contig20204:1066..12691622930137.0444512-CDS-H-elongata_contig20204:1066..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20204 1067..1269 -
1691679295.0777504-CDS-H-elongata_contig20204:1066..12691691679295.0777504-CDS-H-elongata_contig20204:1066..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20204 1067..1269 -
1622930137.0599563-CDS-H-elongata_contig20204:1782..20861622930137.0599563-CDS-H-elongata_contig20204:1782..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20204 1783..2086 -
1691679295.08788-CDS-H-elongata_contig20204:1782..20861691679295.08788-CDS-H-elongata_contig20204:1782..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20204 1783..2086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20204.5717.1prot_H-elongata_contig20204.5717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20204 1067..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20204.5717.1

>prot_H-elongata_contig20204.5717.1 ID=prot_H-elongata_contig20204.5717.1|Name=mRNA_H-elongata_contig20204.5717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLGGD
RGGAMFGSIVRLVGVSAALRPAVWQQLVLRAVSVDSSGGGESFYLPCLSV
VGSSLAKGETPTVAVGAVAACCSFADLVEAGRVGPHAALIARDVPRAFGA
VAPHKRRDHDGGCRGRVVP
back to top

mRNA from alignment at H-elongata_contig20204:1067..2086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20204.5717.1 ID=mRNA_H-elongata_contig20204.5717.1|Name=mRNA_H-elongata_contig20204.5717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-elongata_contig20204:1067..2086- (Himanthalia elongata Himel1 dioecious)
GATGGCGGGCGAGGCGCTGTTACGTGCGCGGCATTGGTCCACGAGCTTCC
GGCGTTCCTTGCCGCCGCGGTGGAGGCCGTTGGCAGCCTGAGGACCCTGG
CCGCGTCCCAAGTGGTGAGCCGCGCCTGGCGGCGGTCCCTGGGGGGGGAT
CGAGGCGGGGCCATGTTCGGAAGCATCGTGCGCTTGGTTGGGGTGTCCGC
CGCCCTCCGGCCCGCCGTGTGGCAGCAACTGGTGCTACGGGCTGTATCCG
TAGATTCTTCGGGCGGTGGTGAGTCTTTCTATTTACCTTGTCTGTCGGTG
GTTGGTGTGTCGGTCAGCAAAGGCGATGAGCGATGATCGGTAAGGTCTAG
CCCCCCCCCCCCACGACATCGGCCGCTAGATACAGATGTGATTGCGGTCC
GGATGAGTGTGGAGATTGTATCGACGTAGTTGCAGAATGCCCGTTATGTA
AAAGGGAAATAGATAATGTGTATGGTTGAAATTGGAAAAATGTAGAGGTT
GTGATAAGAGAGACTTCTCAACCATGGGACAATCAGATTGAGGTGGTAGC
TATACTGGGGGATAACAAGTGGCCTGAGATGGCGAAAACTGATTTAGACA
GTACCAGTATAATATAGTGTGAAAAACACAATTTGGCGCCAACTTTGGCA
AATTAGAAAGAAAACGATCGGCTATTCGGCGGTCAATCATGTAGGAACAA
TGCTCCGTCCTCCCGAGGATACATGGTCAATGGTGTAATAAGAAAGGCAT
GCAGACCCTCCATCACCCGCGTCGGCCGCCCCCGTGTCAAAATCGCGTCG
TTTTATGTCGTGAAAAGGTTCTTCGTTGGCCAAGGGTGAGACGCCCACCG
TGGCGGTAGGGGCGGTAGCGGCATGCTGTTCGTTCGCCGACCTCGTGGAA
GCGGGTAGGGTGGGTCCACATGCCGCTCTTATCGCGCGCGACGTGCCCCG
TGCCTTCGGTGCCGTGGCCCCGCACAAGCGGCGGGATCACGATGGCGGGT
GTCGTGGCCGCGTAGTCCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20204:1067..2086-

>mRNA_H-elongata_contig20204.5717.1 ID=mRNA_H-elongata_contig20204.5717.1|Name=mRNA_H-elongata_contig20204.5717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig20204:1067..2086- (Himanthalia elongata Himel1 dioecious)
GATGGCGGGCGAGGCGCTGTTACGTGCGCGGCATTGGTCCACGAGCTTCC
GGCGTTCCTTGCCGCCGCGGTGGAGGCCGTTGGCAGCCTGAGGACCCTGG
CCGCGTCCCAAGTGGTGAGCCGCGCCTGGCGGCGGTCCCTGGGGGGGGAT
CGAGGCGGGGCCATGTTCGGAAGCATCGTGCGCTTGGTTGGGGTGTCCGC
CGCCCTCCGGCCCGCCGTGTGGCAGCAACTGGTGCTACGGGCTGTATCCG
TAGATTCTTCGGGCGGTGGTGAGTCTTTCTATTTACCTTGTCTGTCGGTG
GTTGGATGGCGGGCGAGGCGCTGTTACGTGCGCGGCATTGGTCCACGAGC
TTCCGGCGTTCCTTGCCGCCGCGGTGGAGGCCGTTGGCAGCCTGAGGACC
CTGGCCGCGTCCCAAGTGGTGAGCCGCGCCTGGCGGCGGTCCCTGGGGGG
GGATCGAGGCGGGGCCATGTTCGGAAGCATCGTGCGCTTGGTTGGGGTGT
CCGCCGCCCTCCGGCCCGCCGTGTGGCAGCAACTGGTGCTACGGGCTGTA
TCCGTAGATTCTTCGGGCGGTGGTGAGTCTTTCTATTTACCTTGTCTGTC
GGTGGTTGGTTCTTCGTTGGCCAAGGGTGAGACGCCCACCGTGGCGGTAG
GGGCGGTAGCGGCATGCTGTTCGTTCGCCGACCTCGTGGAAGCGGGTAGG
GTGGGTCCACATGCCGCTCTTATCGCGCGCGACGTGCCCCGTGCCTTCGG
TGCCGTGGCCCCGCACAAGCGGCGGGATCACGATGGCGGGTGTCGTGGCC
GCGTAGTCCCTGTTCTTCGTTGGCCAAGGGTGAGACGCCCACCGTGGCGG
TAGGGGCGGTAGCGGCATGCTGTTCGTTCGCCGACCTCGTGGAAGCGGGT
AGGGTGGGTCCACATGCCGCTCTTATCGCGCGCGACGTGCCCCGTGCCTT
CGGTGCCGTGGCCCCGCACAAGCGGCGGGATCACGATGGCGGGTGTCGTG
GCCGCGTAGTCCCT
back to top