mRNA_H-elongata_contig201934.5711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201934.5711.1
Unique NamemRNA_H-elongata_contig201934.5711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201934.5711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201934contigH-elongata_contig201934:156..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size251
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201934.5711.1prot_H-elongata_contig201934.5711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201934 156..502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.5203865-CDS-H-elongata_contig201934:155..2201622930136.5203865-CDS-H-elongata_contig201934:155..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201934 156..220 +
1691679294.884052-CDS-H-elongata_contig201934:155..2201691679294.884052-CDS-H-elongata_contig201934:155..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201934 156..220 +
1622930136.532296-CDS-H-elongata_contig201934:408..5021622930136.532296-CDS-H-elongata_contig201934:408..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201934 409..502 +
1691679294.8935537-CDS-H-elongata_contig201934:408..5021691679294.8935537-CDS-H-elongata_contig201934:408..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201934 409..502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.5437324-UTR-H-elongata_contig201934:502..5941622930136.5437324-UTR-H-elongata_contig201934:502..594Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201934 503..594 +
1691679294.9039304-UTR-H-elongata_contig201934:502..5941691679294.9039304-UTR-H-elongata_contig201934:502..594Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201934 503..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201934.5711.1

>prot_H-elongata_contig201934.5711.1 ID=prot_H-elongata_contig201934.5711.1|Name=mRNA_H-elongata_contig201934.5711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MFETKVDKSRLAIYHERFLEYRDDRESLWRFAAIVQAELGARLVLPMTDI
RV*
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mRNA from alignment at H-elongata_contig201934:156..594+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201934.5711.1 ID=mRNA_H-elongata_contig201934.5711.1|Name=mRNA_H-elongata_contig201934.5711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at H-elongata_contig201934:156..594+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGAGACCAAGGTGGACAAGTCCCGCCTCGCCATCTACCACGAGAG
GTTCCTCGAGTACCGGTGAGAGTACGGACAGCACACTAGTCTGTCTACTA
TACATAGCTACGGCCCCACGATAGGGCCTCTTATCCCAAAACAACAAAAA
TAAAATCTTGATACCGCCCGCCTCCTGTAGATGTAAGTATTAACAGCATG
TTCCTCCATCGTCTTGTGTGCACGCTTGTGCTCTCTGTAATACATATTTC
CAGCGACGACAGAGAAAGCCTCTGGAGATTCGCCGCTATCGTCCAGGCGG
AGCTCGGAGCTCGCCTAGTTCTCCCCATGACCGACATCCGTGTCTGATCG
GAGTAAGGCTATTTCTTTGTGTATGCATTGGAGGGATCAGGCCCCCGTGC
TTTTTGTTTTTGTGTATGGGTACACTATCGCTAGTCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig201934:156..594+

>mRNA_H-elongata_contig201934.5711.1 ID=mRNA_H-elongata_contig201934.5711.1|Name=mRNA_H-elongata_contig201934.5711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig201934:156..594+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGAGACCAAGGTGGACAAGTCCCGCCTCGCCATCTACCACGAGAG
GTTCCTCGAGTACCGATGTTTGAGACCAAGGTGGACAAGTCCCGCCTCGC
CATCTACCACGAGAGGTTCCTCGAGTACCGCGACGACAGAGAAAGCCTCT
GGAGATTCGCCGCTATCGTCCAGGCGGAGCTCGGAGCTCGCCTAGTTCTC
CCCATGACCGACATCCGTGTCTGACGACGACAGAGAAAGCCTCTGGAGAT
TCGCCGCTATCGTCCAGGCGGAGCTCGGAGCTCGCCTAGTTCTCCCCATG
ACCGACATCCGTGTCTGA
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