mRNA_H-elongata_contig201879.5710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201879.5710.1
Unique NamemRNA_H-elongata_contig201879.5710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201879.5710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201879contigH-elongata_contig201879:364..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.4559925-CDS-H-elongata_contig201879:363..4311622930136.4559925-CDS-H-elongata_contig201879:363..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201879 364..431 +
1691679294.866772-CDS-H-elongata_contig201879:363..4311691679294.866772-CDS-H-elongata_contig201879:363..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201879 364..431 +
1622930136.4715648-CDS-H-elongata_contig201879:896..10891622930136.4715648-CDS-H-elongata_contig201879:896..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201879 897..1089 +
1691679294.8758903-CDS-H-elongata_contig201879:896..10891691679294.8758903-CDS-H-elongata_contig201879:896..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201879 897..1089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201879.5710.1prot_H-elongata_contig201879.5710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201879 364..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201879.5710.1

>prot_H-elongata_contig201879.5710.1 ID=prot_H-elongata_contig201879.5710.1|Name=mRNA_H-elongata_contig201879.5710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
VAKRKDGRKQANVLNLVRRIDTRWSPEHNMLKSLVVHKEPISDFLRLNLH
KASRGLSPTEWLAVKEVSSILEPVAEVNKKIQGGPGG
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mRNA from alignment at H-elongata_contig201879:364..1090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201879.5710.1 ID=mRNA_H-elongata_contig201879.5710.1|Name=mRNA_H-elongata_contig201879.5710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=727bp|location=Sequence derived from alignment at H-elongata_contig201879:364..1090+ (Himanthalia elongata Himel1 dioecious)
GTAGCGAAGCGCAAGGACGGGAGGAAGCAGGCCAATGTCTTGAACTTGGT
TCGCCGCATTGACACAAGGTGAGTCTTCAACGCCCGAGTTGTTTTATCTA
TTTATGTTTTCTGTTTCTATTTATGTTTTCTGTTTTCTTTGAAGGCATTT
TTTGCGGTGCATTTTTTCGAGATCTTCGACCCGAAGGTTTTAATTTCTGT
ACATACTTTTAAAATATTTTACGTTATCTCCTCCTAATATCTAATGAAAA
ATTTCTATAAAAATTGTGATATTGGTGCATTTTTGCGCGTTTACCATTCC
AAATGAAGTGGTTTATTAAATCTATAAAACGTTAGTATTAGTAGTGTGGT
GAGCGATAGCAATAATAAGGAAGAAAAAAAATGGGTTTTGTTTTGAAAGA
AAACGTGGTTCCAGCTAGGTCAATTAATGCACGACAGTCAATCAATTGTG
CCGTGTTCGTTAACATACATCTCTTCACTTCCCCTGCCCGCTCGTCGTCC
CTCCCTCTGCTCTCCCTACCGTGGATCTTGTAGGTGGTCTCCCGAACACA
ATATGTTGAAGAGTCTCGTGGTGCACAAGGAACCTATTTCCGACTTCCTC
CGGCTCAACCTCCACAAAGCCTCGCGTGGTCTTTCGCCAACAGAGTGGCT
TGCCGTGAAGGAAGTTTCCAGCATTCTCGAGCCCGTGGCCGAGGTAAACA
AGAAAATTCAAGGTGGACCGGGTGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig201879:364..1090+

>mRNA_H-elongata_contig201879.5710.1 ID=mRNA_H-elongata_contig201879.5710.1|Name=mRNA_H-elongata_contig201879.5710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig201879:364..1090+ (Himanthalia elongata Himel1 dioecious)
GTAGCGAAGCGCAAGGACGGGAGGAAGCAGGCCAATGTCTTGAACTTGGT
TCGCCGCATTGACACAAGGTAGCGAAGCGCAAGGACGGGAGGAAGCAGGC
CAATGTCTTGAACTTGGTTCGCCGCATTGACACAAGGTGGTCTCCCGAAC
ACAATATGTTGAAGAGTCTCGTGGTGCACAAGGAACCTATTTCCGACTTC
CTCCGGCTCAACCTCCACAAAGCCTCGCGTGGTCTTTCGCCAACAGAGTG
GCTTGCCGTGAAGGAAGTTTCCAGCATTCTCGAGCCCGTGGCCGAGGTAA
ACAAGAAAATTCAAGGTGGACCGGGTGGGGTGGTCTCCCGAACACAATAT
GTTGAAGAGTCTCGTGGTGCACAAGGAACCTATTTCCGACTTCCTCCGGC
TCAACCTCCACAAAGCCTCGCGTGGTCTTTCGCCAACAGAGTGGCTTGCC
GTGAAGGAAGTTTCCAGCATTCTCGAGCCCGTGGCCGAGGTAAACAAGAA
AATTCAAGGTGGACCGGGTGGG
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