mRNA_H-elongata_contig201840.5707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201840.5707.1
Unique NamemRNA_H-elongata_contig201840.5707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.300e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVAR 108
            ELYDLINRDYADFILVSTKLSGVG +V+ LR+P+AR
Sbjct:   55 ELYDLINRDYADFILVSTKLSGVGSKVSHLREPMAR 90
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BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.330e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVAR 108
            ELYDLINRDYADFILVSTKLSGVG +V+ LR+P+AR
Sbjct:   54 ELYDLINRDYADFILVSTKLSGVGSKVSHLREPMAR 89
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BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.800e-7
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    4 LYDLINRDYADFILVSTKLSGVGGRVADLRDPV 102
            LY+LINRDYADFILVSTKLSGV  +V+DL  P+
Sbjct:   76 LYELINRDYADFILVSTKLSGVENKVSDLATPI 108
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BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A6I9RSL1_ELAGV (Conserved oligomeric Golgi complex subunit 2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RSL1_ELAGV)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVARY 111
            EL DLINRDYADF+ +ST+L  V   VA +RDP+A +
Sbjct:   67 ELVDLINRDYADFVSLSTRLVDVDSAVARMRDPLAEF 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMA5_ECTSI5.300e-1183.33Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE5.330e-1183.33Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A835ZA59_9STRA1.800e-775.76Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6I9RSL1_ELAGV1.980e-559.46Conserved oligomeric Golgi complex subunit 2 n=4 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201840contigH-elongata_contig201840:676..786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LMA5
Preferred nameCOG2
KEGG koko:K20289
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2307@1,KOG2307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.0803773-CDS-H-elongata_contig201840:675..7861622930136.0803773-CDS-H-elongata_contig201840:675..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201840 676..786 +
1691679294.6814704-CDS-H-elongata_contig201840:675..7861691679294.6814704-CDS-H-elongata_contig201840:675..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201840 676..786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201840.5707.1prot_H-elongata_contig201840.5707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201840 676..786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201840.5707.1

>prot_H-elongata_contig201840.5707.1 ID=prot_H-elongata_contig201840.5707.1|Name=mRNA_H-elongata_contig201840.5707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVARY
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mRNA from alignment at H-elongata_contig201840:676..786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201840.5707.1 ID=mRNA_H-elongata_contig201840.5707.1|Name=mRNA_H-elongata_contig201840.5707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig201840:676..786+ (Himanthalia elongata Himel1 dioecious)
GAGCTATACGACCTCATCAACCGAGACTACGCCGACTTCATTTTGGTTTC
CACCAAGCTTAGCGGCGTTGGGGGCAGGGTGGCCGACCTCAGGGACCCCG
TGGCGAGGTAT
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Coding sequence (CDS) from alignment at H-elongata_contig201840:676..786+

>mRNA_H-elongata_contig201840.5707.1 ID=mRNA_H-elongata_contig201840.5707.1|Name=mRNA_H-elongata_contig201840.5707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig201840:676..786+ (Himanthalia elongata Himel1 dioecious)
GAGCTATACGACCTCATCAACCGAGACTACGCCGACTTCATTTTGGTTTC
CACCAAGCTTAGCGGCGTTGGGGGCAGGGTGGCCGACCTCAGGGACCCCG
TGGCGAGGTATGAGCTATACGACCTCATCAACCGAGACTACGCCGACTTC
ATTTTGGTTTCCACCAAGCTTAGCGGCGTTGGGGGCAGGGTGGCCGACCT
CAGGGACCCCGTGGCGAGGTAT
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