mRNA_H-elongata_contig20180.5704.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: D8LLG8_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG8_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.710e-54 Identity = 119/272 (43.75%), Postives = 147/272 (54.04%), Query Frame = 1
Query: 1 GRVDVLFNNAAVCLPGSDG-----------AVLEKTLAVNFYGALGVMEACLPAM-----------------------AADTETSLGP-TIVWVSSGDGELCYLSSKWQRLFRRAES-------------DGSDHVLPSEEAET----------------EFAFGQSPAYSLSKAAVNAVVRAWAPHLAAER------------------GVRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALRPTYFLP-GKFYRNGKEICW 567
GRVD+LFNNA VC P DG +L +TLAVNF+GAL V+EAC+PA+ A T TSL P T+VW+SSGDGELC+L SKW+ L A+S +D + + + + E AFG +PAYSLSKAAVNA VR WAP + A GVRLVAVCPGDVLT M S+EE+ARGD VSPE+AA+EVV +AL +P G+FYR+G+EI W
Sbjct: 146 GRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLEDVKSPLSDLLATATDTITTTSKQNSTAPAGSQQEGEQGQVEEMAFGPTPAYSLSKAAVNAAVRTWAPCIQAPTVPAEAPENTKSRTGVRGGGVRLVAVCPGDVLTRMTSKEEMARGDAVSPEEAAVEVVDLALSSANDIPAGRFYRHGEEIGW 417
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A835YS44_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS44_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.820e-33 Identity = 94/217 (43.32%), Postives = 118/217 (54.38%), Query Frame = 1
Query: 1 GRVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAES-----DGSDHVLPSEEAE--TEFAFGQSPAYSLSKAAVNAVVRA-----WAPH---------LAAERG-------VRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALRPTYFLPGKFYRNGKEICW 567
G + +FNNA VCLPG+D A L+ +L VNFYG L VMEACLP M D E +V VSSGDGEL +L+S R+A++ +D +L + E AFG +PAYS+SKA +NA VR +AP A+ RG ++AVCPGDV TLM SEEE R +S +AA VVG+A G FYR G I W
Sbjct: 127 GSLTAVFNNAGVCLPGADIATLQYSLGVNFYGPLRVMEACLPFM--DEEG----VVVNVSSGDGELLWLNSDIAEALRQAQTVQDVRAAADDILQRAALDPGAELAFGATPAYSVSKALLNAAVRCRHGIPYAPDPAEGALNAGRASSRGGGSTAQRPAVIAVCPGDVRTLMASEEEAQREGVLSALEAAAHVVGLATWRERTAGGLFYRYGAVIPW 337
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A7S1GWA1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWA1_HEMAN) HSP 1 Score: 122 bits (307), Expect = 4.480e-31 Identity = 82/198 (41.41%), Postives = 111/198 (56.06%), Query Frame = 1
Query: 10 DVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAESDGS-----DHVLPSEEAETEFAFGQSPAYSLSKAAVNAVVRAWA------PHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGV-SPEQAALEVVGVALRPTYFLPGKFYRNGKEICW 567
D+L +NA VCL GSD ++ + + VNF+GAL ++ A PAM G +V +SSG+GEL YL S+ Q L ES + + E E AFG +P+YS+SKA +NA+ R A PH + + + AVCPGDV T M + +E DGV SPEQAA++VV VAL P G F+R+ I W
Sbjct: 75 DLLISNAGVCLEGSDRSIFDHAMQVNFFGALRMIRALAPAMRRK-----GGCVVNISSGEGELVYLCSRLQELLPSIESVDELCRVMEACIDDAEGGEELAFGPTPSYSVSKAGLNALTRILACSTRGSPH---DHTLGVRAVCPGDVDTAMCTLDEK---DGVLSPEQAAIDVVWVALHPEECANGGFFRHRDSIPW 261
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A7S2XFG2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFG2_9EUKA) HSP 1 Score: 97.4 bits (241), Expect = 5.220e-21 Identity = 75/206 (36.41%), Postives = 105/206 (50.97%), Query Frame = 1
Query: 1 GRVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTET----SLGPTIVWVSSGDGELCYL-SSKWQRLFRRAESDGSDHVLPSEEAET-------EFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALRPTYFLPGK-----FYRNGKEICW 567
G VDVLFNNAAVCL GS+ V + +N G L ++E + D S ++ VSS +GEL YL SS + L + SD V+ E+ E+AFG +P YS+SKAA+ A+ + A R + AVCPGDV T MM+ E+ VSP +A+ +VV +AL GK F+R +++ W
Sbjct: 102 GGVDVLFNNAAVCLEGSNVEVARSSFQINVIGPLALVEGLMEQQKMDDRRERRKSTQRCVINVSSSEGELGYLHSSLAEALLTASASDDPQAVIRVLESIQNDFDPLLEYAFGPTPFYSVSKAALIALTQVLARRDPDGRSFAVHAVCPGDVSTSMMTPEQ--ESHAVSPAEASEDVVWLALAHPRRADGKLDHGKFWRYREQVEW 305
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: L1IQ43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQ43_GUITC) HSP 1 Score: 89.4 bits (220), Expect = 3.600e-19 Identity = 63/154 (40.91%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 130 MAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAESDGSDHVLPSEEAE------TEFAFGQSPAYSLSKAAVNAVVRAWAPHLA-AERGVRLVAVCPGDVLTLMMSEEELARGDGV-SPEQAALEVVGVALRPTYFLPGKFYRNGKEICW 567
+ E + G I+ +SSGDGEL L+S+ QRL + +S+ L E E E AFG +PAYS+SKAA+N + R A + ++ +R VAVCPGDV T M S E GD V +P QAA +V+ RP+ G FYR + I W
Sbjct: 13 LETSNENARGGIIINISSGDGELACLNSELQRLLKEVQSESDLESLLRELWEGTCLRGQELAFGPTPAYSVSKAALNVLTRIQAREIEMSQLKLRAVAVCPGDVDTRMCSAGE---GDRVLTPAQAAGDVIWAIERPSECPSGGFYREREPIPW 163
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A7S2ZT12_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT12_9RHOD) HSP 1 Score: 84.0 bits (206), Expect = 3.080e-16 Identity = 66/202 (32.67%), Postives = 94/202 (46.53%), Query Frame = 1
Query: 1 GRVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAES------------DGSDHVLPSEEAETEFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALR-PTYFLPGKFYRNGKEICW 567
G +DV+ NNAAVCL + L L VNF+GA+ + ACL + A L VSSGDGE + S+ + F +S + +D V P E G+ P Y +SK A+N R L E G+R+++VCPGDV T M SP AA + + + P+ + G F+R+ + I W
Sbjct: 81 GALDVIVNNAAVCLEEWSSSALTNCLEVNFFGAVRTV-ACLGQLLAKDACILN-----VSSGDGESVWFSTAVRERFEGVQSTNALLDALRDFAEKADAVPPEE-----VVHGEQPTYKVSKFALNCYTRLLHNDLN-ESGIRVLSVCPGDVRTRMNPSASR------SPSDAAKAIAELVVGGPSTYQSGSFFRDREVISW 264
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A7S0BP00_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BP00_9RHOD) HSP 1 Score: 82.8 bits (203), Expect = 8.320e-16 Identity = 68/202 (33.66%), Postives = 97/202 (48.02%), Query Frame = 1
Query: 1 GRVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAES------------DGSDHVLPSEEAETEFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALR-PTYFLPGKFYRNGKEICW 567
G +DV+ NNAAVCL + L L VN +GA+ + CL + + IV VSSGDGE +LS+ + F + +S + +D LPS+E G+ P Y +SK A+N R L E G+R++AVCPGDV T M P AA +V + + P+ + G FYR+ + I W
Sbjct: 81 GALDVIVNNAAVCLEDWSSSALMDCLEVNLFGAVRTVS-CLGQLLGEDAC-----IVNVSSGDGESVWLSTAVRERFEKVQSTKVLLDVLRELAEKADS-LPSQEV----VHGEQPTYKVSKFALNCYTRLLHNDLN-ESGIRVLAVCPGDVRTGMNPSASRC------PSDAAKAIVELVVGGPSTYQSGGFYRDCEIISW 264
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: A0A7S0NQP3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQP3_9EUKA) HSP 1 Score: 80.5 bits (197), Expect = 7.100e-15 Identity = 73/196 (37.24%), Postives = 96/196 (48.98%), Query Frame = 1
Query: 10 DVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSSKWQRLFRRAESDGSDHVL------PSEEAETEFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERG-----VRLVAVCPGDVLTLMMSEEELARGDGVSPEQAALEVVGVALRPTYFLP-GKFYRNGKEI 561
+VL NNAAVC G V+ ++L N G L + A + ++ VSSGDGEL YL+S Q FRRA S + L P + A +PAYS+SKAA+NA+ R A A V AVCPGDV T M S E + +S + AA ++V + LR LP GKF+R + I
Sbjct: 83 EVLINNAAVCERGWTRQVVRRSLKTNVIGPLALCRELGAVGCAAPRRARRLRVLNVSSGDGELVYLNSALQDEFRRASSVRTLLQLLARVTPPRQTIGGAPAHSPTPAYSVSKAALNALTRILAGEHAGGTSELCASVWFAAVCPGDVSTRMCSIEPR---EALSADAAAHDLVWL-LRHAEALPSGKFWRQCEAI 274
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: R1DJ38_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DJ38_EMIHU) HSP 1 Score: 78.6 bits (192), Expect = 1.280e-13 Identity = 72/210 (34.29%), Postives = 93/210 (44.29%), Query Frame = 1
Query: 4 RVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSS-------------KWQRLFRRAESDGSDHVLPSEEAETEFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGV-SPEQAALEVVGVAL----------RPTYFLPGKFYRNGKEI 561
RVD+L NNAAVC PG V ++ N + A LP M + ++ VSSGDGEL +LSS + RL R P A G +PAYS+SKAA+N R L + GV + A CPGDV T M S E R +GV SPE AA ++ +A G+F+R G+ I
Sbjct: 370 RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGMLRRRRGA----VLHVSSGDGELVFLSSDLAPRLAGAASERELLRLLARLSRGRDGFRFPDRPP----AHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCSCE---RHEGVASPESAADDLARLAAGALGGXXXEAAARRLESGRFWRAGRTI 568
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Match: R1EIL5_EMIHU (DNA ligase (ATP) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EIL5_EMIHU) HSP 1 Score: 77.4 bits (189), Expect = 3.710e-13 Identity = 67/182 (36.81%), Postives = 85/182 (46.70%), Query Frame = 1
Query: 4 RVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETSLGPTIVWVSSGDGELCYLSS-------------KWQRLFRRAESDGSDHVLPSEEAETEFAFGQSPAYSLSKAAVNAVVRAWAPHLAAERGVRLVAVCPGDVLTLMMSEEELARGDGV-SPEQAALEVVGVA 507
RVD+L NNAAVC PG V ++ N + A LP M + ++ VSSGDGEL +LSS + RL R P A G +PAYS+SKAA+N R L + GV + A CPGDV T M S E R +GV SPE AA ++ +A
Sbjct: 81 RVDLLVNNAAVCEPGWGRDVALRSFRTNVLAPATLTRAVLPGMLRRRRGA----VLHVSSGDGELVFLSSDLAPRLAGAASERELLRLLARLSRGRDGFRFPDRPP----AHGPTPAYSVSKAALNRHTRLVGDALPRDGGVWVGAACPGDVRTRMCSCE---RHEGVASPESAADDLARLA 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20180.5704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20180.5704.1 >prot_H-elongata_contig20180.5704.1 ID=prot_H-elongata_contig20180.5704.1|Name=mRNA_H-elongata_contig20180.5704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp GRVDVLFNNAAVCLPGSDGAVLEKTLAVNFYGALGVMEACLPAMAADTETback to top mRNA from alignment at H-elongata_contig20180:3255..4316- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20180.5704.1 ID=mRNA_H-elongata_contig20180.5704.1|Name=mRNA_H-elongata_contig20180.5704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1062bp|location=Sequence derived from alignment at H-elongata_contig20180:3255..4316- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20180:3255..4316- >mRNA_H-elongata_contig20180.5704.1 ID=mRNA_H-elongata_contig20180.5704.1|Name=mRNA_H-elongata_contig20180.5704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig20180:3255..4316- (Himanthalia elongata Himel1 dioecious)back to top |