mRNA_H-elongata_contig20168.5693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20168.5693.1
Unique NamemRNA_H-elongata_contig20168.5693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 8.290e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 ALMKRAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 138
            +L  + VRS+GTE RV+GH+IPPS    +FVCFRGQDI DLHVHD
Sbjct:   38 SLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHD 82
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A8C0XF66_CASCN (LSM14 domain-containing protein n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0XF66_CASCN)

HSP 1 Score: 58.5 bits (140), Expect = 1.940e-9
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 ALMKRAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 132
            AL K AVRS+GTE R    +IPP DE FE++ FRG DIKDL V
Sbjct:   37 ALAKSAVRSFGTEDRPTDRLIPPRDEVFEYIIFRGSDIKDLTV 79
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.270e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 138
            V+S+GTE+RV+G  +P SDE F  + FRGQDIKDLHVHD
Sbjct:   40 VKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHD 78
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: T1FY03_HELRO (LSM14 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FY03_HELRO)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-8
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 138
            VRS+GTE R   H + P DE FE++ FRG DIKDLHV D
Sbjct:   41 VRSFGTEDRHTDHPVQPRDEIFEYIIFRGTDIKDLHVCD 79
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A6J1HZ84_CUCMA (protein decapping 5-like n=1 Tax=Cucurbita maxima TaxID=3661 RepID=A0A6J1HZ84_CUCMA)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   16 RAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 132
            R VRS+GTE R  G  +PPSD+ FE++ FRG DIKDL V
Sbjct:   48 RNVRSFGTEGRKDGPQVPPSDKVFEYILFRGSDIKDLQV 86
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: V3ZYH6_LOTGI (LSM14 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZYH6_LOTGI)

HSP 1 Score: 52.8 bits (125), Expect = 2.330e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 132
            VRS+GTE R     +PP +E FE++ FRG DIKDLHV
Sbjct:   41 VRSFGTEDRPTDRPVPPREEIFEYIIFRGSDIKDLHV 77
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: UPI000779FB07 (protein LSM14 homolog A-A-like n=2 Tax=Acropora TaxID=6127 RepID=UPI000779FB07)

HSP 1 Score: 55.5 bits (132), Expect = 2.500e-7
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHDHDVEHKEVGRELKIHRPPDP 198
            VRS+GTE R     I P DE FEF+ FRGQDIKDLHV +   +++E    +  H P DP
Sbjct:   41 VRSFGTEDREVEKYIAPRDEQFEFIVFRGQDIKDLHVCEAPQQNQE---RVNAHLPQDP 96
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A7S2UZL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZL5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.810e-7
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHD 138
            VRS+GTESR     IPP+D+ FE++ FRG DIKDLHVH+
Sbjct:   41 VRSHGTESR-NAEFIPPNDKIFEYITFRGCDIKDLHVHE 78
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: A0A3M7Q2B1_BRAPC (LSM14-like protein (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7Q2B1_BRAPC)

HSP 1 Score: 53.1 bits (126), Expect = 4.030e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 132
            VRS+GTE R     +PP DE FE++ FRG DI+DLHV
Sbjct:   40 VRSFGTEDRPTDRPVPPRDEVFEYIIFRGSDIEDLHV 76
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BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Match: T1G906_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G906_HELRO)

HSP 1 Score: 54.7 bits (130), Expect = 4.630e-7
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   22 VRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHV 132
            VRS+GTE R   H +P  DE FE++ FRG DIKDLHV
Sbjct:   45 VRSFGTEDRPTDHPVPARDEVFEYIIFRGSDIKDLHV 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20168.5693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU5_ECTSI8.290e-1266.67Novel Sm-like protein with long N-and C-terminal d... [more]
A0A8C0XF66_CASCN1.940e-962.79LSM14 domain-containing protein n=1 Tax=Castor can... [more]
A0A836C876_9STRA5.270e-966.67Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
T1FY03_HELRO7.680e-861.54LSM14 domain-containing protein n=1 Tax=Helobdella... [more]
A0A6J1HZ84_CUCMA1.350e-761.54protein decapping 5-like n=1 Tax=Cucurbita maxima ... [more]
V3ZYH6_LOTGI2.330e-759.46LSM14 domain-containing protein n=1 Tax=Lottia gig... [more]
UPI000779FB072.500e-750.85protein LSM14 homolog A-A-like n=2 Tax=Acropora Ta... [more]
A0A7S2UZL5_9STRA3.810e-764.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3M7Q2B1_BRAPC4.030e-759.46LSM14-like protein (Fragment) n=1 Tax=Brachionus p... [more]
T1G906_HELRO4.630e-762.16Uncharacterized protein n=1 Tax=Helobdella robusta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20168contigH-elongata_contig20168:373..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog2880.D8LRU5
Preferred nameLSM14A
KEGG koko:K18749
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.4312172-CDS-H-elongata_contig20168:372..5611622930134.4312172-CDS-H-elongata_contig20168:372..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20168 373..561 -
1691679294.0147665-CDS-H-elongata_contig20168:372..5611691679294.0147665-CDS-H-elongata_contig20168:372..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20168 373..561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.448044-UTR-H-elongata_contig20168:561..5701622930134.448044-UTR-H-elongata_contig20168:561..570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20168 562..570 -
1691679294.026411-UTR-H-elongata_contig20168:561..5701691679294.026411-UTR-H-elongata_contig20168:561..570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20168 562..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20168.5693.1prot_H-elongata_contig20168.5693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20168 373..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20168.5693.1

>prot_H-elongata_contig20168.5693.1 ID=prot_H-elongata_contig20168.5693.1|Name=mRNA_H-elongata_contig20168.5693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MKRAVRSYGTESRVQGHMIPPSDETFEFVCFRGQDIKDLHVHDHDVEHKE
VGRELKIHRPPDP
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mRNA from alignment at H-elongata_contig20168:373..570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20168.5693.1 ID=mRNA_H-elongata_contig20168.5693.1|Name=mRNA_H-elongata_contig20168.5693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig20168:373..570- (Himanthalia elongata Himel1 dioecious)
TATGCCCTCATGAAACGAGCAGTGCGAAGCTACGGCACGGAGTCCAGGGT
GCAGGGCCACATGATCCCGCCCTCGGACGAAACGTTCGAGTTCGTTTGTT
TTCGTGGCCAGGACATCAAGGATCTCCACGTCCACGACCACGACGTCGAA
CACAAGGAGGTGGGTCGCGAATTGAAAATACATCGACCACCTGACCCA
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Coding sequence (CDS) from alignment at H-elongata_contig20168:373..570-

>mRNA_H-elongata_contig20168.5693.1 ID=mRNA_H-elongata_contig20168.5693.1|Name=mRNA_H-elongata_contig20168.5693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig20168:373..570- (Himanthalia elongata Himel1 dioecious)
ATGAAACGAGCAGTGCGAAGCTACGGCACGGAGTCCAGGGTGCAGGGCCA
CATGATCCCGCCCTCGGACGAAACGTTCGAGTTCGTTTGTTTTCGTGGCC
AGGACATCAAGGATCTCCACGTCCACGACCACGACGTCGAACACAAGGAG
GTGGGTCGCGAATTGAAAATACATCGACCACCTGACCCAATGAAACGAGC
AGTGCGAAGCTACGGCACGGAGTCCAGGGTGCAGGGCCACATGATCCCGC
CCTCGGACGAAACGTTCGAGTTCGTTTGTTTTCGTGGCCAGGACATCAAG
GATCTCCACGTCCACGACCACGACGTCGAACACAAGGAGGTGGGTCGCGA
ATTGAAAATACATCGACCACCTGACCCA
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