mRNA_H-elongata_contig2016.5690.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2016.5690.1
Unique NamemRNA_H-elongata_contig2016.5690.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0009F72EBD (uncharacterized protein LOC110104543 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F72EBD)

HSP 1 Score: 57.0 bits (136), Expect = 6.240e-8
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
            LLKS YGLRQ+P  W+ M   HL ++GF   K++P +     +   + L +YVDD+ +  N
Sbjct:  127 LLKSIYGLRQAPRQWYTMFTNHLLKLGFDYSKADPSLLTLHRDKTRIFLLVYVDDILVTSN 187          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A438GCG9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GCG9_VITVI)

HSP 1 Score: 56.6 bits (135), Expect = 8.690e-8
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRC 180
            L KSFYGL+QSP  W+  + +++ +IGF     +  VY      + V L LYVDD+++ C
Sbjct:  422 LKKSFYGLKQSPRQWYKRLDKYMLDIGFNRSSHDGCVYFKLNEDIMVYLLLYVDDMRVAC 481          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0009F51537 (uncharacterized protein LOC110109328 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F51537)

HSP 1 Score: 55.1 bits (131), Expect = 2.640e-7
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
            LLKS YGLRQ+P  W+     HL ++GF+  K++P +       + + L +YVDD+ +  N
Sbjct:   19 LLKSIYGLRQAPRQWYTTFTNHLLKLGFEYNKADPSLLTLCRGKIRIFLLVYVDDILVTGN 79          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0007EFD91B (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFD91B)

HSP 1 Score: 55.1 bits (131), Expect = 2.990e-7
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCNA 186
            L+KS YGLRQ+P  W+ ++ + L E GF    S+  ++++ ++   V+L +YVDD+ +  NA
Sbjct:  134 LIKSIYGLRQAPREWFTILSDALLEFGFTQTFSDSSLFVFKKDNKLVVLLVYVDDMVLTGNA 195          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A5N6PZX9_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PZX9_9ASTR)

HSP 1 Score: 54.7 bits (130), Expect = 3.950e-7
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKI 174
            L+KS YGL+QSP NW G +   L E+GF    S+  +++ +++ V ++L +YVDD+ I
Sbjct:   97 LVKSLYGLKQSPRNWNGKLTSTLLEMGFVQSISDYSLFVKNDSNVYIVLLVYVDDIVI 154          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2I0WS67_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WS67_9ASPA)

HSP 1 Score: 53.9 bits (128), Expect = 7.880e-7
Identity = 20/61 (32.79%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
            L K+ YGL+Q+P  W+     +L  +GF +  S+P ++++++N + + L +YVDD+    N
Sbjct:  786 LHKALYGLKQAPRQWYNTFTAYLLSLGFTNSVSDPSLFLFNKNNIQLFLLIYVDDILFTGN 846          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI000989DA65 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI000989DA65)

HSP 1 Score: 53.5 bits (127), Expect = 1.050e-6
Identity = 21/56 (37.50%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDV 168
            L +S YGL+Q+P  W+  +   L ++GF+S +S+P +++Y +      L LYVDD+
Sbjct:   36 LSRSLYGLKQAPRAWYQRIAAFLHQVGFRSTRSDPSLFVYRQGTDTTYLLLYVDDI 91          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2I0VHL7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VHL7_9ASPA)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-6
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
            L K  Y L+Q P  W+    E+L  +GFK+  S+P ++++ +N + + L +YVDD+    N
Sbjct:  126 LYKVLYRLKQVPRQWYNTFTEYLLSLGFKNSVSDPSLFLFDKNNIQLFLLIYVDDILFTGN 186          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A6L2NC58_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NC58_TANCI)

HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6
Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYS-ENGVNVILTLYVDDVKIRCNA 186
            L KSFYGL+QSP  W+    E++   GFK    E  VY  S   G  + L LYVDD+ I C +
Sbjct:  969 LKKSFYGLKQSPRQWYKRFDEYMLNNGFKRSSYENCVYYRSYAQGEYIYLLLYVDDMLIACKS 1031          
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2K3MH07_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MH07_TRIPR)

HSP 1 Score: 52.8 bits (125), Expect = 1.970e-6
Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
            L K+ YGLRQ+P  W   +   +  +GF +  S+P +++Y++ GV   L +YVDD+ +  N
Sbjct:  119 LKKAIYGLRQAPRAWHDSLKAFVLSVGFCTSLSDPSLFVYTKQGVQAFLLVYVDDLLLTGN 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009F72EBD6.240e-839.34uncharacterized protein LOC110104543 n=1 Tax=Dendr... [more]
A0A438GCG9_VITVI8.690e-840.00Retrovirus-related Pol polyprotein from transposon... [more]
UPI0009F515372.640e-737.70uncharacterized protein LOC110109328 n=1 Tax=Dendr... [more]
UPI0007EFD91B2.990e-737.10uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A5N6PZX9_9ASTR3.950e-741.38Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2I0WS67_9ASPA7.880e-732.79Retrovirus-related Pol polyprotein from transposon... [more]
UPI000989DA651.050e-637.50uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2I0VHL7_9ASPA1.060e-634.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2NC58_TANCI1.080e-644.44Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A2K3MH07_TRIPR1.970e-636.07Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2016contigH-elongata_contig2016:347..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.1625242-CDS-H-elongata_contig2016:346..5351622930134.1625242-CDS-H-elongata_contig2016:346..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2016 347..535 -
1691679293.9082632-CDS-H-elongata_contig2016:346..5351691679293.9082632-CDS-H-elongata_contig2016:346..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2016 347..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2016.5690.1prot_H-elongata_contig2016.5690.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2016 347..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2016.5690.1

>prot_H-elongata_contig2016.5690.1 ID=prot_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILT
LYVDDVKIRCNA*
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mRNA from alignment at H-elongata_contig2016:347..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2016.5690.1 ID=mRNA_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig2016:347..535- (Himanthalia elongata Himel1 dioecious)
CTTCTCAAGAGCTTTTACGGCCTCCGTCAGAGTCCAACCAACTGGTGGGG CATGGTTCACGAACACCTGGCGGAGATTGGCTTCAAAAGCCTCAAGTCGG AACCTTACGTCTATATCTACTCGGAGAACGGAGTCAATGTCATTCTGACC CTGTATGTCGACGACGTTAAAATACGTTGTAATGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig2016:347..535-

>mRNA_H-elongata_contig2016.5690.1 ID=mRNA_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig2016:347..535- (Himanthalia elongata Himel1 dioecious)
CTTCTCAAGAGCTTTTACGGCCTCCGTCAGAGTCCAACCAACTGGTGGGG
CATGGTTCACGAACACCTGGCGGAGATTGGCTTCAAAAGCCTCAAGTCGG
AACCTTACGTCTATATCTACTCGGAGAACGGAGTCAATGTCATTCTGACC
CTGTATGTCGACGACGTTAAAATACGTTGTAATGCTTAACTTCTCAAGAG
CTTTTACGGCCTCCGTCAGAGTCCAACCAACTGGTGGGGCATGGTTCACG
AACACCTGGCGGAGATTGGCTTCAAAAGCCTCAAGTCGGAACCTTACGTC
TATATCTACTCGGAGAACGGAGTCAATGTCATTCTGACCCTGTATGTCGA
CGACGTTAAAATACGTTGTAATGCTTAA
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