mRNA_H-elongata_contig2016.5690.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0009F72EBD (uncharacterized protein LOC110104543 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F72EBD) HSP 1 Score: 57.0 bits (136), Expect = 6.240e-8 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
LLKS YGLRQ+P W+ M HL ++GF K++P + + + L +YVDD+ + N
Sbjct: 127 LLKSIYGLRQAPRQWYTMFTNHLLKLGFDYSKADPSLLTLHRDKTRIFLLVYVDDILVTSN 187
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A438GCG9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GCG9_VITVI) HSP 1 Score: 56.6 bits (135), Expect = 8.690e-8 Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRC 180
L KSFYGL+QSP W+ + +++ +IGF + VY + V L LYVDD+++ C
Sbjct: 422 LKKSFYGLKQSPRQWYKRLDKYMLDIGFNRSSHDGCVYFKLNEDIMVYLLLYVDDMRVAC 481
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0009F51537 (uncharacterized protein LOC110109328 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F51537) HSP 1 Score: 55.1 bits (131), Expect = 2.640e-7 Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
LLKS YGLRQ+P W+ HL ++GF+ K++P + + + L +YVDD+ + N
Sbjct: 19 LLKSIYGLRQAPRQWYTTFTNHLLKLGFEYNKADPSLLTLCRGKIRIFLLVYVDDILVTGN 79
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI0007EFD91B (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFD91B) HSP 1 Score: 55.1 bits (131), Expect = 2.990e-7 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCNA 186
L+KS YGLRQ+P W+ ++ + L E GF S+ ++++ ++ V+L +YVDD+ + NA
Sbjct: 134 LIKSIYGLRQAPREWFTILSDALLEFGFTQTFSDSSLFVFKKDNKLVVLLVYVDDMVLTGNA 195
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A5N6PZX9_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PZX9_9ASTR) HSP 1 Score: 54.7 bits (130), Expect = 3.950e-7 Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKI 174
L+KS YGL+QSP NW G + L E+GF S+ +++ +++ V ++L +YVDD+ I
Sbjct: 97 LVKSLYGLKQSPRNWNGKLTSTLLEMGFVQSISDYSLFVKNDSNVYIVLLVYVDDIVI 154
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2I0WS67_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WS67_9ASPA) HSP 1 Score: 53.9 bits (128), Expect = 7.880e-7 Identity = 20/61 (32.79%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
L K+ YGL+Q+P W+ +L +GF + S+P ++++++N + + L +YVDD+ N
Sbjct: 786 LHKALYGLKQAPRQWYNTFTAYLLSLGFTNSVSDPSLFLFNKNNIQLFLLIYVDDILFTGN 846
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: UPI000989DA65 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI000989DA65) HSP 1 Score: 53.5 bits (127), Expect = 1.050e-6 Identity = 21/56 (37.50%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDV 168
L +S YGL+Q+P W+ + L ++GF+S +S+P +++Y + L LYVDD+
Sbjct: 36 LSRSLYGLKQAPRAWYQRIAAFLHQVGFRSTRSDPSLFVYRQGTDTTYLLLYVDDI 91
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2I0VHL7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VHL7_9ASPA) HSP 1 Score: 53.5 bits (127), Expect = 1.060e-6 Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
L K Y L+Q P W+ E+L +GFK+ S+P ++++ +N + + L +YVDD+ N
Sbjct: 126 LYKVLYRLKQVPRQWYNTFTEYLLSLGFKNSVSDPSLFLFDKNNIQLFLLIYVDDILFTGN 186
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A6L2NC58_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NC58_TANCI) HSP 1 Score: 53.5 bits (127), Expect = 1.080e-6 Identity = 28/63 (44.44%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYS-ENGVNVILTLYVDDVKIRCNA 186
L KSFYGL+QSP W+ E++ GFK E VY S G + L LYVDD+ I C +
Sbjct: 969 LKKSFYGLKQSPRQWYKRFDEYMLNNGFKRSSYENCVYYRSYAQGEYIYLLLYVDDMLIACKS 1031
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Match: A0A2K3MH07_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MH07_TRIPR) HSP 1 Score: 52.8 bits (125), Expect = 1.970e-6 Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 1 LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTLYVDDVKIRCN 183
L K+ YGLRQ+P W + + +GF + S+P +++Y++ GV L +YVDD+ + N
Sbjct: 119 LKKAIYGLRQAPRAWHDSLKAFVLSVGFCTSLSDPSLFVYTKQGVQAFLLVYVDDLLLTGN 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2016.5690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig2016.5690.1 >prot_H-elongata_contig2016.5690.1 ID=prot_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp LLKSFYGLRQSPTNWWGMVHEHLAEIGFKSLKSEPYVYIYSENGVNVILTback to top mRNA from alignment at H-elongata_contig2016:347..535- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig2016.5690.1 ID=mRNA_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig2016:347..535- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig2016:347..535- >mRNA_H-elongata_contig2016.5690.1 ID=mRNA_H-elongata_contig2016.5690.1|Name=mRNA_H-elongata_contig2016.5690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig2016:347..535- (Himanthalia elongata Himel1 dioecious)back to top |