mRNA_H-elongata_contig201519.5685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201519.5685.1
Unique NamemRNA_H-elongata_contig201519.5685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-16
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 AYLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            A+ QL HPTKL E+VE FM  +GW+LIWTPPYMPSFQPIELFW
Sbjct:  487 AFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFW 529
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BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.750e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:   97 YIHLNHPERLEERVVMFMRKKGWALIWTPPYMPSFQPIELFW 138
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BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.640e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  105 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 146
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BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.780e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  264 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 305
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.960e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  186 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 227
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.070e-15
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV   M+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  139 YIHLNHPERLEERVVTLMRKKGWALIWTPPYMPSFQPIELFW 180
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.390e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  211 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 252
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.310e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  366 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 407
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5KRM6_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.330e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  425 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 466
[Close]
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.380e-15
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 YLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW 129
            Y+ L+HP +L ERV  FM+ KGW LIWTPPYMPSFQPIELFW
Sbjct:  382 YIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFW 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201519.5685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.040e-1676.74Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5JS64_9PHAE1.750e-1573.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ92_9PHAE2.640e-1573.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUM1_9PHAE2.780e-1573.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF39_9PHAE2.960e-1573.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEG4_9PHAE3.070e-1571.43DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE3.390e-1573.81DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE4.310e-1573.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRM6_9PHAE4.330e-1573.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE4.380e-1573.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201519contigH-elongata_contig201519:736..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.5491462-CDS-H-elongata_contig201519:735..8641622930133.5491462-CDS-H-elongata_contig201519:735..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201519 736..864 +
1691679293.6478348-CDS-H-elongata_contig201519:735..8641691679293.6478348-CDS-H-elongata_contig201519:735..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201519 736..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201519.5685.1prot_H-elongata_contig201519.5685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201519 736..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201519.5685.1

>prot_H-elongata_contig201519.5685.1 ID=prot_H-elongata_contig201519.5685.1|Name=mRNA_H-elongata_contig201519.5685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
AYLQLHHPTKLAERVEGFMKSKGWELIWTPPYMPSFQPIELFW
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mRNA from alignment at H-elongata_contig201519:736..864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201519.5685.1 ID=mRNA_H-elongata_contig201519.5685.1|Name=mRNA_H-elongata_contig201519.5685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig201519:736..864+ (Himanthalia elongata Himel1 dioecious)
GCGTACTTGCAGCTTCACCACCCTACCAAACTCGCTGAGCGGGTAGAGGG
GTTCATGAAGAGTAAAGGGTGGGAGTTGATTTGGACACCCCCGTACATGC
CGTCTTTCCAGCCGATCGAGCTGTTTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig201519:736..864+

>mRNA_H-elongata_contig201519.5685.1 ID=mRNA_H-elongata_contig201519.5685.1|Name=mRNA_H-elongata_contig201519.5685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig201519:736..864+ (Himanthalia elongata Himel1 dioecious)
GCGTACTTGCAGCTTCACCACCCTACCAAACTCGCTGAGCGGGTAGAGGG
GTTCATGAAGAGTAAAGGGTGGGAGTTGATTTGGACACCCCCGTACATGC
CGTCTTTCCAGCCGATCGAGCTGTTTTGGGCGTACTTGCAGCTTCACCAC
CCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAAGGGTG
GGAGTTGATTTGGACACCCCCGTACATGCCGTCTTTCCAGCCGATCGAGC
TGTTTTGG
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