mRNA_H-elongata_contig201504.5683.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI) HSP 1 Score: 149 bits (377), Expect = 2.490e-40 Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 76 DKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIF EFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEK
Sbjct: 549 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEK 619
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE) HSP 1 Score: 149 bits (377), Expect = 6.580e-40 Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 76 DKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIF EFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEK
Sbjct: 964 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEK 1034
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D7G3R5_ECTSI (INCENP_ARK-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.900e-24 Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
+P+WA + +A L+RQYGG P+NP+KIF +F+TC+LE IF+T K KWDR S+G+W +DRLTIAEK
Sbjct: 42 VPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEK 108
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A835ZCU2_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.740e-20 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKW-DRSSSGNWHTDRLTIAEK 288
IP WARGK L L+RQ+GG P+NPD IF+EFFTC+L+HIF+T+K ++ RSSSGNW D+LT+ E+
Sbjct: 460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPER 527
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 9.960e-18 Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEK 288
K +P+WA+ L + L+RQ+ GPN L+PDKIF E TCNLE IF+ KKS++ R +SSGNW D +TIAEK
Sbjct: 227 KKKVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEK 298
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: K0SBK4_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBK4_THAOC) HSP 1 Score: 78.6 bits (192), Expect = 6.130e-15 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEK 288
K ++P WA+ L + L++QY GPN L+PDKIF E +CNL+ IF+ KK+++ R +SSGNW D +T EK
Sbjct: 621 KKTVPQWAQKSNLMRALEKQYADGPNRLDPDKIFGEVLSCNLDEIFDKKKARYQRRTSSGNWSQDHVTAKEK 692
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.150e-12 Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 79 KSSIPDWARGKTLAKILDRQYGG---PNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRS--SSGNWHTDRLTIAEK 288
K IP WA L L++QY G ++PD+IF E +C+LE IF TKK+K RS SSGNW D++T+AEK
Sbjct: 30 KKKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEK 104
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.450e-12 Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAE 285
IP WA+G L++ L RQY ++PDKIF E FTC+LE IF KS++ R SS NW DR+T E
Sbjct: 195 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQE 261
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A6H5KX29_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX29_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 4.390e-12 Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAE 285
IP WA+G L++ L RQY ++PDKIF E FTC+LE IF KS++ R SS NW DR+T E
Sbjct: 1441 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVTKSRYHRRGSSANWTPDRVTPQE 1507
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: B8LC10_THAPS (Incenp-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC10_THAPS) HSP 1 Score: 67.4 bits (163), Expect = 2.260e-11 Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFN-TKKSKW-DRSSSGNW 258
K ++P WA+ L L++Q+ GPN L+PDKIF E TCNLE IF+ +KKS++ +R+SSGNW
Sbjct: 193 KKAVPTWAQRSNLHAALEKQFADGPNRLDPDKIFGEVLTCNLEDIFDKSKKSRYKNRTSSGNW 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig201504.5683.1 >prot_H-elongata_contig201504.5683.1 ID=prot_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp PESGSESGEDGEEAAQEIAEPQEPNDKSSIPDWARGKTLAKILDRQYGGPback to top mRNA from alignment at H-elongata_contig201504:1..867- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig201504.5683.1 ID=mRNA_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig201504:1..867- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig201504:1..867- >mRNA_H-elongata_contig201504.5683.1 ID=mRNA_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig201504:1..867- (Himanthalia elongata Himel1 dioecious)back to top |