mRNA_H-elongata_contig200758.5654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200758.5654.1
Unique NamemRNA_H-elongata_contig200758.5654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig200758.5654.1 vs. uniprot
Match: D7FR32_ECTSI (GDP-fucose protein O-fucosyltransferase, family GT65 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR32_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.280e-36
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 KAVVYNEEPWQSKVIHFSGDCHDSRWEGSGNRRPLIHFYAFMMHVDPLVDARVKRFARDRLRYRDGIFCKASQVL 225
            +AV Y+E+ W SKVIHFSGDCHDSR EGS NRRPLIHFYAFM+H D LVD+RVKRFARDRLRYRD IFCKASQ++
Sbjct:  137 QAVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQIV 211
[Close]
BLAST of mRNA_H-elongata_contig200758.5654.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.940e-35
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 KAVVYNEEPWQSKVIHFSGDCHDSRWEGSGNRRPLIHFYAFMMHVDPLVDARVKRFARDRLRYRDGIFCKASQVL 225
            +A+ Y+E+ W SKVIHFSGDCHD+R EGS NRRPLIHFYAFM+H D LVD+RVKRFARDRLRYRD IFCKASQ++
Sbjct:  517 QAITYDEDAWNSKVIHFSGDCHDNRAEGSKNRRPLIHFYAFMLHADKLVDSRVKRFARDRLRYRDRIFCKASQIV 591
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200758.5654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR32_ECTSI1.280e-3680.00GDP-fucose protein O-fucosyltransferase, family GT... [more]
A0A6H5L164_9PHAE8.940e-3577.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200758contigH-elongata_contig200758:466..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.2e-29
Seed eggNOG ortholog2880.D7FR32
EggNOG free text desc.GDP-fucose protein O-fucosyltransferase
EggNOG OGs2B2NM@1,2S0D4@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930129.7672303-CDS-H-elongata_contig200758:465..6901622930129.7672303-CDS-H-elongata_contig200758:465..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200758 466..690 +
1691679292.488557-CDS-H-elongata_contig200758:465..6901691679292.488557-CDS-H-elongata_contig200758:465..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200758 466..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200758.5654.1prot_H-elongata_contig200758.5654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200758 466..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200758.5654.1

>prot_H-elongata_contig200758.5654.1 ID=prot_H-elongata_contig200758.5654.1|Name=mRNA_H-elongata_contig200758.5654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
KAVVYNEEPWQSKVIHFSGDCHDSRWEGSGNRRPLIHFYAFMMHVDPLVD
ARVKRFARDRLRYRDGIFCKASQVL
back to top

mRNA from alignment at H-elongata_contig200758:466..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200758.5654.1 ID=mRNA_H-elongata_contig200758.5654.1|Name=mRNA_H-elongata_contig200758.5654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig200758:466..690+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGTCGTGTACAATGAGGAGCCCTGGCAGTCGAAGGTCATCCACTT
TTCCGGAGATTGCCACGACAGTCGGTGGGAGGGGAGCGGAAACAGGCGTC
CCCTGATCCACTTCTATGCCTTCATGATGCACGTCGATCCGCTCGTCGAC
GCACGAGTCAAGCGCTTCGCGAGGGATCGCCTTCGATATCGAGATGGAAT
CTTCTGCAAGGCCAGCCAGGTGCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig200758:466..690+

>mRNA_H-elongata_contig200758.5654.1 ID=mRNA_H-elongata_contig200758.5654.1|Name=mRNA_H-elongata_contig200758.5654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig200758:466..690+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGTCGTGTACAATGAGGAGCCCTGGCAGTCGAAGGTCATCCACTT
TTCCGGAGATTGCCACGACAGTCGGTGGGAGGGGAGCGGAAACAGGCGTC
CCCTGATCCACTTCTATGCCTTCATGATGCACGTCGATCCGCTCGTCGAC
GCACGAGTCAAGCGCTTCGCGAGGGATCGCCTTCGATATCGAGATGGAAT
CTTCTGCAAGGCCAGCCAGGTGCTTAAGGCGGTCGTGTACAATGAGGAGC
CCTGGCAGTCGAAGGTCATCCACTTTTCCGGAGATTGCCACGACAGTCGG
TGGGAGGGGAGCGGAAACAGGCGTCCCCTGATCCACTTCTATGCCTTCAT
GATGCACGTCGATCCGCTCGTCGACGCACGAGTCAAGCGCTTCGCGAGGG
ATCGCCTTCGATATCGAGATGGAATCTTCTGCAAGGCCAGCCAGGTGCTT
back to top